RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 NTHL1P78549 312 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 SLC7A9P82251 487 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 PRSS36Q5K4E3 855 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 ERMARDQ5T6L9 678 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 MTSS1LQ765P7 747 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 BHLHA9Q7RTU4 235 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 PSTKQ8IV42 348 aaKnown RBP10.49□□□□□ -0.73
CD44-207ENST00000425428 YAF2Q8IY57 180 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 CELF5Q8N6W0 485 aaKnown RBP10.49□□□□□ -0.73
CD44-207ENST00000425428 KCTD6Q8NC69 237 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 SMRP1Q8NCR6 262 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 ING5Q8WYH8 240 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 NT5C3BQ969T7 300 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 BTN2A3PQ96KV6 586 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 GUCD1Q96NT3 240 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 ZWILCHQ9H900 591 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 TBC1D14Q9P2M4 693 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 PCSK1NQ9UHG2 260 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 CDH7Q9ULB5 785 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 CPQQ9Y646 472 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 HELZP42694 1942 aaKnown RBP10.49□□□□□ -0.73
CD44-207ENST00000425428 GRID2IPA4D2P6 1211 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 H3BQ06 376 aaPredicted RBP10.49□□□□□ -0.73
CD44-207ENST00000425428 DAPK3O43293 454 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 ENDOD1O94919 500 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 TBX18O95935 607 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 FYNP06241 537 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 IRF1P10914 325 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 MIPP30301 263 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 RWDD2BP57060 319 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 COL19A1Q14993 1142 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 SEL1L2Q5TEA6 688 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 LRRC38Q5VT99 294 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 POLNQ7Z5Q5 900 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 FAM131BQ86XD5 332 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 CCDC50Q8IVM0 306 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 PLCD3Q8N3E9 789 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 MAFAQ8NHW3 353 aaPredicted RBP10.49□□□□□ -0.73
CD44-207ENST00000425428 ZSCAN18Q8TBC5 510 aaPredicted RBP10.49□□□□□ -0.73
CD44-207ENST00000425428 CENPIQ92674 756 aaPredicted RBP10.49□□□□□ -0.73
CD44-207ENST00000425428 FGF13Q92913 245 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 KHSRPQ92945 711 aaKnown RBP eCLIP10.49□□□□□ -0.73
CD44-207ENST00000425428 TCEAL4Q96EI5 215 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 RBM41Q96IZ5 413 aaKnown RBP10.49□□□□□ -0.73
CD44-207ENST00000425428 TKTL2Q9H0I9 626 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 S1PR5Q9H228 398 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 ZFP14Q9HCL3 533 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 OSER1Q9NX31 292 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 SMPD4Q9NXE4 827 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 ARHGAP26Q9UNA1 814 aa10.49□□□□□ -0.73
CD44-207ENST00000425428 NUP210Q8TEM1 1887 aaPredicted RBP10.49□□□□□ -0.73
CD44-207ENST00000425428 ESPNB1AK53 854 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 LRCH4O75427 683 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 TADA3O75528 432 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 ZRANB2O95218 330 aaKnown RBP eCLIP10.48□□□□□ -0.73
CD44-207ENST00000425428 LATS1O95835 1130 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 FTCDO95954 541 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 MOCS2O96007 188 aaPredicted RBP10.48□□□□□ -0.73
CD44-207ENST00000425428 CYBBP04839 570 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 CEBPBP17676 345 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 WEE1P30291 646 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 CHKAP35790 457 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 CXCR3P49682 368 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 PDK2Q15119 407 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 SLC5A9Q2M3M2 681 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 ZC3H12AQ5D1E8 599 aaKnown RBP10.48□□□□□ -0.73
CD44-207ENST00000425428 TMEM150AQ86TG1 271 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 ARID3BQ8IVW6 561 aaPredicted RBP10.48□□□□□ -0.73
CD44-207ENST00000425428 TDRD5Q8NAT2 981 aaKnown RBP10.48□□□□□ -0.73
CD44-207ENST00000425428 ITFG1Q8TB96 612 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.48□□□□□ -0.73
CD44-207ENST00000425428 TEKT4Q8WW24 435 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 HSPH1Q92598 858 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 SMARCD2Q92925 531 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 NTAN1Q96AB6 310 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 MSLNLQ96KJ4 702 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 C16orf45Q96MC5 204 aaPredicted RBP10.48□□□□□ -0.73
CD44-207ENST00000425428 HAPLN3Q96S86 360 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 CYP2S1Q96SQ9 504 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 NAPGQ99747 312 aaPredicted RBP10.48□□□□□ -0.73
CD44-207ENST00000425428 EPAS1Q99814 870 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 SLC46A2Q9BY10 475 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 TRIM7Q9C029 511 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 DHX35Q9H5Z1 703 aaKnown RBP10.48□□□□□ -0.73
CD44-207ENST00000425428 PIGVQ9NUD9 493 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 USP15Q9Y4E8 981 aaPredicted RBP10.48□□□□□ -0.73
CD44-207ENST00000425428 CAPN6Q9Y6Q1 641 aa10.48□□□□□ -0.73
CD44-207ENST00000425428 NOTCH4Q99466 2003 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.47□□□□□ -0.73
CD44-207ENST00000425428 E2F8A0AVK6 867 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 USP27XA6NNY8 438 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 KCNU1A8MYU2 1149 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 F5H5T6 163 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 MDM4O15151 490 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 MSI1O43347 362 aaKnown RBP10.47□□□□□ -0.73
CD44-207ENST00000425428 HTR7P34969 479 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 ADRA1BP35368 520 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 CCR2P41597 374 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 HDAC4P56524 1084 aa10.47□□□□□ -0.73
CD44-207ENST00000425428 ETF1P62495 437 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms