RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ZFXP17010 805 aaPredicted RBP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 RPL17P18621 184 aaKnown RBP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 ATF6P18850 670 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 KDELR1P24390 212 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 HTR7P34969 479 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 SERPINB6P35237 376 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 TNNT3P45378 269 aaPredicted RBP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 GPR15P49685 360 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 RABGGTBP53611 331 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 EPHB4P54760 987 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 VCPP55072 806 aaKnown RBP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 TPI1P60174 286 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 VSNL1P62760 191 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 DYNLT1P63172 113 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 UBE3AQ05086 875 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 DUSP4Q13115 394 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 MTA1Q13330 715 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 KLF1Q13351 362 aaPredicted RBP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 DPYSL3Q14195 570 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 HLTFQ14527 1009 aaKnown RBP eCLIP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 TAZQ16635 292 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 BRMS1LQ5PSV4 323 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 ERMARDQ5T6L9 678 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 SDHAF4Q5VUM1 108 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 BSPRYQ5W0U4 402 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 TXNRD3NBQ6F5E7 133 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 PM20D1Q6GTS8 502 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 WDR93Q6P2C0 686 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 FBXO38Q6PIJ6 1188 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 CCDC137Q6PK04 289 aaKnown RBP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 TMCO3Q6UWJ1 677 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 RNF19BQ6ZMZ0 732 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 BHLHA9Q7RTU4 235 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 ITIH5Q86UX2 942 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 MON1AQ86VX9 555 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 JAMLQ86YT9 394 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 CDKL3Q8IVW4 592 aaPredicted RBP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 IFT20Q8IY31 132 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 ELMOD1Q8N336 334 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 CCDC185Q8N715 623 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 PRELID2Q8N945 189 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 STKLD1Q8NE28 680 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 SCAMP5Q8TAC9 235 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 ATG4AQ8WYN0 398 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 RAPGEF5Q92565 580 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 EDEM1Q92611 657 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 CENPIQ92674 756 aaPredicted RBP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 DPF3Q92784 378 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 RNF34Q969K3 372 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 HAUS1Q96CS2 278 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 PNKPQ96T60 521 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 FERMT1Q9BQL6 677 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 TTLL2Q9BWV7 592 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 HEMGNQ9BXL5 484 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 FAM129AQ9BZQ8 928 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 DCLK3Q9C098 648 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 NACA2Q9H009 215 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 ACBD3Q9H3P7 528 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 PRDM16Q9HAZ2 1276 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 CYP4F11Q9HBI6 524 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 PCDH18Q9HCL0 1135 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 ARFGAP3Q9NP61 516 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 TLR9Q9NR96 1032 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 FAM114A2Q9NRY5 505 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 PIGVQ9NUD9 493 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 GPATCH2LQ9NWQ4 482 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 CLIC5Q9NZA1 410 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 FNIP2Q9P278 1114 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 ASIC3Q9UHC3 531 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 PCYOX1Q9UHG3 505 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 AMACRQ9UHK6 382 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 FEZ2Q9UHY8 353 aaPredicted RBP6.19□□□□□ -1.42
HMGB3-202ENST00000419110 NAALADL1Q9UQQ1 740 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 INSL5Q9Y5Q6 135 aa6.19□□□□□ -1.42
HMGB3-202ENST00000419110 NUP205Q92621 2012 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 KIAA1549LQ6ZVL6 1849 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 FAM92AA1XBS5 289 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CFAP69A5D8W1 941 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 SLC38A8A6NNN8 435 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 RNF223E7ERA6 249 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 FGF10O15520 208 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 ADAM12O43184 909 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 LIASO43766 372 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 TLR5O60602 858 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CST8O60676 142 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 SOAT2O75908 522 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 ENDOD1O94919 500 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 VNN2O95498 520 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 GLUD1P00367 558 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 IGLV3-25P01717 112 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 KRT10P13645 584 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 H2AFXP16104 143 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 TFE3P19532 575 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 CCR1P32246 355 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 COILP38432 576 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 MAGEA10P43363 369 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 KPNA1P52294 538 aaPredicted RBP6.18□□□□□ -1.42
HMGB3-202ENST00000419110 EPHB3P54753 998 aa6.18□□□□□ -1.42
HMGB3-202ENST00000419110 OTUD4Q01804 1114 aaKnown RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms