RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TUBB4AP04350 444 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 SLC2A3P11169 496 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 CEBPBP17676 345 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 PFKLP17858 780 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 CCR1P32246 355 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 AVPR1AP37288 418 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 CXCR3P49682 368 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 NNTQ13423 1086 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 ODF2Q5BJF6 829 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 BNIPLQ7Z465 357 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 TTC16Q8NEE8 873 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 UBE2Q2Q8WVN8 375 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 ZNF592Q92610 1267 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 SLC22A12Q96S37 553 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 NAPGQ99747 312 aaPredicted RBP18.79■□□□□ 0.6
SDC1-203ENST00000403076 S1PR5Q9H228 398 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 WDR6Q9NNW5 1121 aaKnown RBP18.79■□□□□ 0.6
SDC1-203ENST00000403076 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.79■□□□□ 0.65e-8■■■□□ 15.1
SDC1-203ENST00000403076 MTMR10Q9NXD2 777 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 ZMYM5Q9UJ78 669 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 CLUHO75153 1309 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 CCDC66A2RUB6 948 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 CTAGE9A4FU28 777 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 APOEP02649 317 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 KRT7P08729 469 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 MTHFRP42898 656 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 COL19A1Q14993 1142 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 BOLA3Q53S33 107 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 CMTM8Q8IZV2 173 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 HSPH1Q92598 858 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 MSLNLQ96KJ4 702 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 GKN1Q9NS71 199 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 SLC12A6Q9UHW9 1150 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 CD207Q9UJ71 328 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 CPQQ9Y646 472 aa18.78■□□□□ 0.6
SDC1-203ENST00000403076 SOBPA7XYQ1 873 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 PSTPIP1O43586 416 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 MOCS2O96007 188 aaPredicted RBP18.77■□□□□ 0.6
SDC1-203ENST00000403076 IRF1P10914 325 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 CTNNA2P26232 953 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 IL1R2P27930 398 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 CTNNA1P35221 906 aaKnown RBP18.77■□□□□ 0.6
SDC1-203ENST00000403076 SLC25A11Q02978 314 aaKnown RBP18.77■□□□□ 0.6
SDC1-203ENST00000403076 PPP2R5DQ14738 602 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 CBX2Q14781 532 aaPredicted RBP18.77■□□□□ 0.6
SDC1-203ENST00000403076 SMTNL2Q2TAL5 461 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 KCNT1Q5JUK3 1230 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 BRMS1LQ5PSV4 323 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 ERMARDQ5T6L9 678 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 LRRC38Q5VT99 294 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 GET4Q7L5D6 327 aaPredicted RBP18.77■□□□□ 0.6
SDC1-203ENST00000403076 CCDC185Q8N715 623 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 CD101Q93033 1021 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 PEBP4Q96S96 227 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 KLF16Q9BXK1 252 aaPredicted RBP18.77■□□□□ 0.6
SDC1-203ENST00000403076 TKTL2Q9H0I9 626 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 PCDHA3Q9Y5H8 950 aa18.77■□□□□ 0.6
SDC1-203ENST00000403076 ANAPC1Q9H1A4 1944 aa18.77■□□□□ 0.59
SDC1-203ENST00000403076 H3BQ06 376 aaPredicted RBP18.76■□□□□ 0.59
SDC1-203ENST00000403076 OLFM2O95897 454 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 ATP1A1P05023 1023 aaKnown RBP18.76■□□□□ 0.59
SDC1-203ENST00000403076 RARAP10276 462 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 ADRA1BP35368 520 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 KCNQ1P51787 676 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 SLC7A9P82251 487 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 RING1Q06587 406 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 ATP13A4Q4VNC1 1196 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 EFHC2Q5JST6 749 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 DNTTIP2Q5QJE6 756 aaKnown RBP18.76■□□□□ 0.59
SDC1-203ENST00000403076 NUGGCQ68CJ6 796 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 TXNRD3NBQ6F5E7 133 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 POLNQ7Z5Q5 900 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 UNC45BQ8IWX7 931 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 ATP6V0D2Q8N8Y2 350 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 KRT35Q92764 455 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 PLD4Q96BZ4 506 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 SLC39A13Q96H72 371 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 HES6Q96HZ4 224 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 FCRL2Q96LA5 508 aaPredicted RBP18.76■□□□□ 0.59
SDC1-203ENST00000403076 SNRNP25Q9BV90 132 aaKnown RBP18.76■□□□□ 0.59
SDC1-203ENST00000403076 TLR10Q9BXR5 811 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 GPATCH2LQ9NWQ4 482 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 DDX56Q9NY93 547 aaKnown RBP18.76■□□□□ 0.59
SDC1-203ENST00000403076 NOTCH4Q99466 2003 aa18.76■□□□□ 0.59
SDC1-203ENST00000403076 KRT1P04264 644 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 KCNA5P22460 613 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 MARCKSL1P49006 195 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 HARS2P49590 506 aaKnown RBP18.75■□□□□ 0.59
SDC1-203ENST00000403076 RWDD2BP57060 319 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 EIF4EBP2Q13542 120 aaPredicted RBP18.75■□□□□ 0.59
SDC1-203ENST00000403076 KCTD6Q8NC69 237 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 NTAN1Q96AB6 310 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 ACSF2Q96CM8 615 aaPredicted RBP18.75■□□□□ 0.59
SDC1-203ENST00000403076 PSMB7Q99436 277 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 SMG9Q9H0W8 520 aaKnown RBP18.75■□□□□ 0.59
SDC1-203ENST00000403076 DHX35Q9H5Z1 703 aaKnown RBP18.75■□□□□ 0.59
SDC1-203ENST00000403076 UBE2ZQ9H832 354 aaPredicted RBP18.75■□□□□ 0.59
SDC1-203ENST00000403076 KLHL11Q9NVR0 708 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 FZD10Q9ULW2 581 aa18.75■□□□□ 0.59
SDC1-203ENST00000403076 AP4E1Q9UPM8 1137 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms