RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 YWHAZP63104 245 aaKnown RBP16.49■□□□□ 0.23
CLN3-201ENST00000333496 PITX1P78337 314 aaPredicted RBP16.49■□□□□ 0.23
CLN3-201ENST00000333496 PPP2R5DQ14738 602 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 C2orf27AQ580R0 203 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 EMC10Q5UCC4 262 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 FAM183BPQ6ZVS7 135 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 ASCL5Q7RTU5 278 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 GAS2L3Q86XJ1 694 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 NEK11Q8NG66 645 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 PCMTD1Q96MG8 357 aaPredicted RBP16.49■□□□□ 0.23
CLN3-201ENST00000333496 FAM126AQ9BYI3 521 aaPredicted RBP16.49■□□□□ 0.23
CLN3-201ENST00000333496 POPDC2Q9HBU9 364 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 CBX8Q9HC52 389 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 DEC1Q9P2X7 70 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 STOML2Q9UJZ1 356 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 NOCTQ9UK39 431 aaKnown RBP16.49■□□□□ 0.23
CLN3-201ENST00000333496 FBXO10Q9UK96 956 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 DAAM1Q9Y4D1 1078 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 PCDHGA2Q9Y5H1 932 aa16.49■□□□□ 0.23
CLN3-201ENST00000333496 GFRA2O00451 464 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 ATG13O75143 517 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 CISD3P0C7P0 127 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 KIR2DL1P43626 348 aaPredicted RBP16.48■□□□□ 0.23
CLN3-201ENST00000333496 RING1Q06587 406 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 EIF4EBP2Q13542 120 aaPredicted RBP16.48■□□□□ 0.23
CLN3-201ENST00000333496 ZC3H14Q6PJT7 736 aaKnown RBP16.48■□□□□ 0.23
CLN3-201ENST00000333496 OLFML1Q6UWY5 402 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 TOGARAM2Q6ZUX3 1019 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 SYT13Q7L8C5 426 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 TAC4Q86UU9 113 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 LUZP1Q86V48 1076 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 TERB1Q8NA31 727 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 ADAM32Q8TC27 787 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 SLC20A1Q8WUM9 679 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 SLC39A13Q96H72 371 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 FCRL2Q96LA5 508 aaPredicted RBP16.48■□□□□ 0.23
CLN3-201ENST00000333496 NAP1L5Q96NT1 182 aaPredicted RBP16.48■□□□□ 0.23
CLN3-201ENST00000333496 NOX5Q96PH1 765 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 XPO6Q96QU8 1125 aaKnown RBP16.48■□□□□ 0.23
CLN3-201ENST00000333496 DNAJC17Q9NVM6 304 aaKnown RBP16.48■□□□□ 0.23
CLN3-201ENST00000333496 HCN2Q9UL51 889 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 CEP83Q9Y592 693 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 CFAP54Q96N23 3096 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 FAM170AA1A519 330 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 IGLV3-25P01717 112 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 CHRNB2P17787 502 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 TNFRSF4P43489 277 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 TBX4P57082 545 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 OR6B2Q6IFH4 312 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 TMEM35BQ8NCS4 154 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 NKD2Q969F2 451 aaPredicted RBP16.48■□□□□ 0.23
CLN3-201ENST00000333496 SLC2A13Q96QE2 648 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 SPAG5Q96R06 1193 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 PDCL3Q9H2J4 239 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 ZDHHC4Q9NPG8 344 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 ASNSD1Q9NWL6 643 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 CLEC4EQ9ULY5 219 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 TLR6Q9Y2C9 796 aa16.48■□□□□ 0.23
CLN3-201ENST00000333496 SPAG17Q6Q759 2223 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 TBC1D3BA6NDS4 549 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 PRR23AA6NEV1 266 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 CAPN9O14815 690 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 GRAP2O75791 330 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 LATS1O95835 1130 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 GLI1P08151 1106 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 HOXA6P31267 233 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 TIE1P35590 1138 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 STAT1P42224 750 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 GABRB2P47870 512 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 FNTBP49356 437 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 NRLP54845 237 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 NOMO3P69849 1222 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 MRPS21P82921 87 aaKnown RBP16.47■□□□□ 0.23
CLN3-201ENST00000333496 FMO1Q01740 532 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 NNTQ13423 1086 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 EFHC1Q5JVL4 640 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 ADGRF1Q5T601 910 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 GRAMD4Q6IC98 578 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 ZNF677Q86XU0 584 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 DEFB106AQ8N104 65 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 IL17RCQ8NAC3 791 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 ATRIPQ8WXE1 791 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 ANP32BQ92688 251 aaKnown RBP16.47■□□□□ 0.23
CLN3-201ENST00000333496 SERPINB11Q96P15 392 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 TRIM62Q9BVG3 475 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 WDR87Q6ZQQ6 2873 aa16.47■□□□□ 0.23
CLN3-201ENST00000333496 A0A1B0GTH6 734 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 PRRT4C9JH25 899 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 IRAK2O43187 625 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 HSF2BPO75031 334 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 TRUB2O95900 331 aaKnown RBP16.46■□□□□ 0.23
CLN3-201ENST00000333496 SLC6A4P31645 630 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 PXNP49023 591 aaPredicted RBP16.46■□□□□ 0.23
CLN3-201ENST00000333496 DGKGP49619 791 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 CDR2Q01850 454 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 SLC6A3Q01959 620 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 CCDC173Q0VFZ6 552 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 DMC1Q14565 340 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 C2CD6Q53TS8 623 aa16.46■□□□□ 0.23
CLN3-201ENST00000333496 DCAF6Q58WW2 860 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms