RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SESN2P58004 480 aaPredicted RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 HNRNPDQ14103 355 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 TKFCQ3LXA3 575 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 ALLCQ8N6M5 410 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 PDPRQ8NCN5 879 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 FEZF2Q8TBJ5 459 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 RDH11Q8TC12 318 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 ENKURQ8TC29 256 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 SH3RF3Q8TEJ3 882 aaPredicted RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 C10orf82Q8WW14 230 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 RABL2BQ9UNT1 228 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 JAG2Q9Y219 1238 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 GSC2O15499 205 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 ATP9AO75110 1047 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 RARBP10826 455 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 PIK3CAP42336 1068 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 C21orf59P57076 290 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 TUBA4AP68366 448 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 UGP2Q16851 508 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 CERKLQ49MI3 558 aaPredicted RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 ANO7Q6IWH7 933 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 FAM228AQ86W67 206 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 P3H2Q8IVL5 708 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 NIPA2Q8N8Q9 360 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 FAM172AQ8WUF8 416 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 OTUD5Q96G74 571 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 PLEKHA8Q96JA3 519 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 MAGEE1Q9HCI5 957 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 ENTPD7Q9NQZ7 604 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 DMTF1Q9Y222 760 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 TELO2Q9Y4R8 837 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 IGSF9BQ9UPX0 1349 aa6.59□□□□□ -1.35
VPS35-201ENST00000299138 DDX60Q8IY21 1712 aaKnown RBP6.59□□□□□ -1.35
VPS35-201ENST00000299138 TK2O00142 265 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 CYP2C8P10632 490 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 PIM1P11309 404 aaPredicted RBP6.59□□□□□ -1.36
VPS35-201ENST00000299138 CRABP2P29373 138 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 POLD2P49005 469 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 ARPC4P59998 168 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 PDIA2Q13087 525 aaKnown RBP6.59□□□□□ -1.36
VPS35-201ENST00000299138 KCTD2Q14681 263 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 TAF1BQ53T94 588 aaPredicted RBP6.59□□□□□ -1.36
VPS35-201ENST00000299138 RUNDC3AQ59EK9 446 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 DPP8Q6V1X1 898 aaPredicted RBP6.59□□□□□ -1.36
VPS35-201ENST00000299138 ZYG11AQ6WRX3 759 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 VN1R5Q7Z5H4 357 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 RTKN2Q8IZC4 609 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 GALNT6Q8NCL4 622 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 ZNF224Q9NZL3 707 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 VTI1BQ9UEU0 232 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 MLXQ9UH92 298 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 FEM1BQ9UK73 627 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 CHKBQ9Y259 395 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 C5P01031 1676 aa6.59□□□□□ -1.36
VPS35-201ENST00000299138 B2RBV5 119 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 TGFB1I1O43294 461 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 TRIM3O75382 744 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 HSMCR30P0CW71 290 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 CYP2D6P10635 497 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 XPAP23025 273 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 MAPKAPK2P49137 400 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 CEBPGP53567 150 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF394Q53GI3 561 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF618Q5T7W0 954 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 IRAK1BP1Q5VVH5 260 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 SP8Q8IXZ3 490 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 MINDY2Q8NBR6 621 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 LSM14AQ8ND56 463 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 EZH1Q92800 747 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF570Q96NI8 536 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF577Q9BSK1 485 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 DCUN1D5Q9BTE7 237 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 SERHL2Q9H4I8 314 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 SERHLQ9NQF3 203 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 C20orf96Q9NUD7 363 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 NMRK1Q9NWW6 199 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZNF222Q9UK12 451 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 VAV3Q9UKW4 847 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ERI2A8K979 691 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 E7ESA3 106 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ZBTB24O43167 697 aaPredicted RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 USP1O94782 785 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 LYNP07948 512 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 FCGR1AP12314 374 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 UQCRBP14927 111 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 MAPK10P53779 464 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 EPS8Q12929 822 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 P3H1Q32P28 736 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 DGKKQ5KSL6 1271 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 POTEGQ6S5H5 508 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 RNF135Q8IUD6 432 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 ABRAQ8N0Z2 381 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 NLGN1Q8N2Q7 840 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 COA7Q96BR5 231 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 TNIP3Q96KP6 325 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 NDNQ99608 321 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 MUC13Q9H3R2 512 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 NOCTQ9UK39 431 aaKnown RBP6.58□□□□□ -1.36
VPS35-201ENST00000299138 TMEM114B3SHH9 223 aa6.58□□□□□ -1.36
VPS35-201ENST00000299138 APOC4-APOC2K7ER74 178 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms