RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 IKBKEQ14164 716 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 PABPC1LQ4VXU2 614 aaKnown RBP10.7□□□□□ -0.7
UPF3B-201ENST00000276201 LIN52Q52LA3 116 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 XKR9Q5GH70 373 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 POLNQ7Z5Q5 900 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ALDH16A1Q8IZ83 802 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 TTC13Q8NBP0 860 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 TMEM161BQ8NDZ6 487 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ZSWIM2Q8NEG5 633 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 FAM81AQ8TBF8 368 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 TMEM40Q8WWA1 233 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 EPAS1Q99814 870 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ADAMTS10Q9H324 1103 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 DHX33Q9H6R0 707 aaKnown RBP10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ZWILCHQ9H900 591 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 GINS2Q9Y248 185 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 TCRBV5S1A1TA0A578 114 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 TMEM191CA6NGB0 347 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ATP9BO43861 1147 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 TMEM191BP0C7N4 346 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 KRT5P13647 590 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ACO1P21399 889 aaKnown RBP10.7□□□□□ -0.7
UPF3B-201ENST00000276201 PIK3CAP42336 1068 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ZBTB16Q05516 673 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ITGA9Q13797 1035 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 CNPY1Q3B7I2 92 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 PHLDB2Q86SQ0 1253 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 SCUBE1Q8IWY4 988 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 PYROXD1Q8WU10 500 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 LZICQ8WZA0 190 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ZNF668Q96K58 619 aaPredicted RBP10.7□□□□□ -0.7
UPF3B-201ENST00000276201 CYTH2Q99418 400 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 ATXN10Q9UBB4 475 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 TAGLN3Q9UI15 199 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 SQORQ9Y6N5 450 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 GBF1Q92538 1859 aa10.7□□□□□ -0.7
UPF3B-201ENST00000276201 SMIM31A0A1B0GVY4 71 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 MT-ND3P03897 115 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 PBX2P40425 430 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 RABGGTBP53611 331 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 CRYBB1P53674 252 aaPredicted RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 POLE2P56282 527 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 NLRP11P59045 1033 aaKnown RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 THOC5Q13769 683 aaKnown RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 EMC2Q15006 297 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 TFDP3Q5H9I0 405 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 MARK2Q7KZI7 788 aaKnown RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 TMCO2Q7Z6W1 182 aaPredicted RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 GPD1LQ8N335 351 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 GLIS1Q8NBF1 620 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 B4GALNT2Q8NHY0 566 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 SLC44A1Q8WWI5 657 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 CPA5Q8WXQ8 436 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 SLC9A7Q96T83 725 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 OSMRQ99650 979 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 STN1Q9H668 368 aaKnown RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 DCTN4Q9UJW0 460 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 ZNF180Q9UJW8 692 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 A0A0G2JND7 137 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 BUD23O43709 281 aaKnown RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 LPXNO60711 386 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 EFCAB14O75071 495 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 UPP2O95045 317 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 LSM8O95777 96 aaKnown RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 KRT1P04264 644 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 CALB1P05937 261 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 CD58P19256 250 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 CCNFP41002 786 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 CDKN2BP42772 138 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 SERPINB4P48594 390 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 SESN3P58005 492 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 PSMD6Q15008 389 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 TBC1D25Q3MII6 688 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 GPR153Q6NV75 609 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 MFSD7Q6UXD7 560 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 HERC6Q8IVU3 1022 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 ST13P4Q8IZP2 240 aaPredicted RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 PHOSPHO2Q8TCD6 241 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 LINC01599Q8WXQ3 324 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 SLC7A3Q8WY07 619 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 IRGQQ8WZA9 623 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 CPT1BQ92523 772 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 FNBP1Q96RU3 617 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 PBX4Q9BYU1 374 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 FRMD8Q9BZ67 464 aaPredicted RBP10.69□□□□□ -0.7
UPF3B-201ENST00000276201 XPNPEP1Q9NQW7 623 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 NDE1Q9NXR1 346 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 SLC17A7Q9P2U7 560 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 PADI3Q9ULW8 664 aa10.69□□□□□ -0.7
UPF3B-201ENST00000276201 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.68□□□□□ -0.7
UPF3B-201ENST00000276201 EIF4E1BA6NMX2 242 aaKnown RBP10.68□□□□□ -0.7
UPF3B-201ENST00000276201 SPECC1L-ADORA2AF8WAN1 911 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 H0YCG3 227 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 SLC16A4O15374 487 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 CREB3O43889 395 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 DNAJB2P25686 324 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 TFDP1Q14186 410 aa10.68□□□□□ -0.7
UPF3B-201ENST00000276201 PIGHQ14442 188 aaPredicted RBP10.68□□□□□ -0.7
UPF3B-201ENST00000276201 LLGL1Q15334 1064 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms