RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 NT5C1BQ96P26 610 aa23.16■■□□□ 1.3
VTI1B-201ENST00000216456 CDK5RAP1Q96SZ6 601 aaKnown RBP23.16■■□□□ 1.3
VTI1B-201ENST00000216456 METTL14Q9HCE5 456 aaKnown RBP23.16■■□□□ 1.3
VTI1B-201ENST00000216456 HOOK1Q9UJC3 728 aaKnown RBP23.16■■□□□ 1.3
VTI1B-201ENST00000216456 IGHV1OR15-9A0A0B4J2B8 117 aa23.15■■□□□ 1.3
VTI1B-201ENST00000216456 SLC8A3P57103 927 aa23.15■■□□□ 1.3
VTI1B-201ENST00000216456 RPL6Q02878 288 aaKnown RBP23.15■■□□□ 1.3
VTI1B-201ENST00000216456 TRIM61Q5EBN2 209 aa23.15■■□□□ 1.3
VTI1B-201ENST00000216456 IPO9Q96P70 1041 aaKnown RBP23.15■■□□□ 1.3
VTI1B-201ENST00000216456 STRIP2Q9ULQ0 834 aa23.15■■□□□ 1.3
VTI1B-201ENST00000216456 STON1Q9Y6Q2 735 aa23.15■■□□□ 1.3
VTI1B-201ENST00000216456 TPRP12270 2363 aaKnown RBP23.15■■□□□ 1.3
VTI1B-201ENST00000216456 TNRC6BQ9UPQ9 1833 aaKnown RBP23.15■■□□□ 1.3
VTI1B-201ENST00000216456 KCNK5O95279 499 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 TBXAS1P24557 533 aaPredicted RBP23.14■■□□□ 1.29
VTI1B-201ENST00000216456 IL12RB1P42701 662 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 SGSHP51688 502 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 DAOAP59103 153 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 YWHAEP62258 255 aaKnown RBP23.14■■□□□ 1.29
VTI1B-201ENST00000216456 TRIP4Q15650 581 aaPredicted RBP23.14■■□□□ 1.29
VTI1B-201ENST00000216456 TMEM215Q68D42 235 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 PSAPL1Q6NUJ1 521 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 LCLAT1Q6UWP7 414 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 SLC41A1Q8IVJ1 513 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 SIX6OS1Q8N1H7 587 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 PIWIL1Q96J94 861 aaKnown RBP23.14■■□□□ 1.29
VTI1B-201ENST00000216456 MRGPRX1Q96LB2 322 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 KREMEN1Q96MU8 473 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 DCLK3Q9C098 648 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 FAM124BQ9H5Z6 455 aaPredicted RBP23.14■■□□□ 1.29
VTI1B-201ENST00000216456 ZNF510Q9Y2H8 683 aa23.14■■□□□ 1.29
VTI1B-201ENST00000216456 M0QYV0 167 aa23.13■■□□□ 1.29
VTI1B-201ENST00000216456 CHKAP35790 457 aa23.13■■□□□ 1.29
VTI1B-201ENST00000216456 UAP1L1Q3KQV9 507 aa23.13■■□□□ 1.29
VTI1B-201ENST00000216456 LYSMD4Q5XG99 296 aa23.13■■□□□ 1.29
VTI1B-201ENST00000216456 SDE2Q6IQ49 451 aa23.13■■□□□ 1.29
VTI1B-201ENST00000216456 ELOA2Q8IYF1 753 aaPredicted RBP23.13■■□□□ 1.29
VTI1B-201ENST00000216456 RBBP8NLQ8NC74 664 aaPredicted RBP23.13■■□□□ 1.29
VTI1B-201ENST00000216456 DDI1Q8WTU0 396 aa23.13■■□□□ 1.29
VTI1B-201ENST00000216456 SLC35F5Q8WV83 523 aa23.13■■□□□ 1.29
VTI1B-201ENST00000216456 KCTD13Q8WZ19 329 aa23.13■■□□□ 1.29
VTI1B-201ENST00000216456 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.13■■□□□ 1.29
VTI1B-201ENST00000216456 SLC27A6Q9Y2P4 619 aa23.13■■□□□ 1.29
VTI1B-201ENST00000216456 SETSIPP0DME0 302 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 MAPK8P45983 427 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 KCNH2Q12809 1159 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 FUT11Q495W5 492 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 KIAA1324Q6UXG2 1013 aaKnown RBP23.12■■□□□ 1.29
VTI1B-201ENST00000216456 CACUL1Q86Y37 369 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 SYT12Q8IV01 421 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 TRIM59Q8IWR1 403 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 FAM217AQ8IXS0 508 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 PLD4Q96BZ4 506 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 SRRTQ9BXP5 876 aaKnown RBP23.12■■□□□ 1.29
VTI1B-201ENST00000216456 TMEM9BQ9NQ34 198 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 PILRBQ9UKJ0 227 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 PLXND1Q9Y4D7 1925 aa23.12■■□□□ 1.29
VTI1B-201ENST00000216456 ACACBO00763 2458 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 GOLGA6L7A0A1B0GV03 622 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 PAEPP09466 180 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 PRKCHP24723 683 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 HOXD9P28356 352 aaPredicted RBP23.11■■□□□ 1.29
VTI1B-201ENST00000216456 APBA1Q02410 837 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 CPXM2Q8N436 756 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 EHBP1Q8NDI1 1231 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 OR2I1PQ8NGU4 316 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 RNF139Q8WU17 664 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 DDX1Q92499 740 aaKnown RBP23.11■■□□□ 1.29
VTI1B-201ENST00000216456 MED15Q96RN5 788 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 GTPBP4Q9BZE4 634 aaKnown RBP23.11■■□□□ 1.29
VTI1B-201ENST00000216456 CIPCQ9C0C6 399 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 MKRN2Q9H000 416 aaKnown RBP23.11■■□□□ 1.29
VTI1B-201ENST00000216456 MIS12Q9H081 205 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 ACP6Q9NPH0 428 aa23.11■■□□□ 1.29
VTI1B-201ENST00000216456 THAP10Q9P2Z0 257 aaPredicted RBP23.11■■□□□ 1.29
VTI1B-201ENST00000216456 CHD8Q9HCK8 2581 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 PMM2O15305 246 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 CFIP05156 583 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 HLA-EP13747 358 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 NOVA1P51513 510 aaKnown RBP23.1■■□□□ 1.29
VTI1B-201ENST00000216456 ZNF132P52740 706 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 ZNF33AQ06730 810 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 PAK1Q13153 545 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 ZNF234Q14588 700 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 CNGA2Q16280 664 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 CAMK4Q16566 473 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 RFWD3Q6PCD5 774 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 GJB7Q6PEY0 223 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 ZNF366Q8N895 744 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 WFDC5Q8TCV5 224 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 MYEOVQ96EZ4 313 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 INTS2Q9H0H0 1204 aaKnown RBP23.1■■□□□ 1.29
VTI1B-201ENST00000216456 CNGB3Q9NQW8 809 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 ELOVL2Q9NXB9 296 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 KIAA1257Q9ULG3 409 aa23.1■■□□□ 1.29
VTI1B-201ENST00000216456 GFRA2O00451 464 aa23.09■■□□□ 1.29
VTI1B-201ENST00000216456 AP5Z1O43299 807 aa23.09■■□□□ 1.29
VTI1B-201ENST00000216456 ENGP17813 658 aa23.09■■□□□ 1.29
VTI1B-201ENST00000216456 MAOBP27338 520 aa23.09■■□□□ 1.29
VTI1B-201ENST00000216456 PMLP29590 882 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms