RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 PLAC1Q9HBJ0 212 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 COMMD3-BMI1R4GMX3 469 aa16.84■□□□□ 0.29
SHMT2-231ENST00000557433 PHIPQ8WWQ0 1821 aa16.83■□□□□ 0.29
SHMT2-231ENST00000557433 C19orf81C9J6K1 198 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 M0QYV0 167 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 PEX1O43933 1283 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 UBTFL6P0CB48 400 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-231ENST00000557433 CSH1P0DML2 217 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 CSH2P0DML3 217 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 MLNP12872 115 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 ALOX15P16050 662 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-231ENST00000557433 PDGFRAP16234 1089 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 L1CAMP32004 1257 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 STAT5BP51692 787 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 INSCQ1MX18 579 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 LIN52Q52LA3 116 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 RABGAP1LQ5R372 815 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 STEAP4Q687X5 459 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 C1orf228Q6PIY5 440 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 MARK2Q7KZI7 788 aaKnown RBP16.83■□□□□ 0.28
SHMT2-231ENST00000557433 NIM1KQ8IY84 436 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 CCDC33Q8N5R6 958 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 ACTRT2Q8TDY3 377 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 PPP4R1Q8TF05 950 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 ZNF526Q8TF50 670 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-231ENST00000557433 DEPDC1BQ8WUY9 529 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 RXFP2Q8WXD0 754 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 CMTM5Q96DZ9 223 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 WNK4Q96J92 1243 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 GORASP1Q9BQQ3 440 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 SPATA16Q9BXB7 569 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 NRDE2Q9H7Z3 1164 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 PTPRHQ9HD43 1115 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 MYOZ2Q9NPC6 264 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 SMYD2Q9NRG4 433 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 MOCS1Q9NZB8 636 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 DCDC2Q9UHG0 476 aa16.83■□□□□ 0.28
SHMT2-231ENST00000557433 ACKR2O00590 384 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 MDM4O15151 490 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 ALDH1A2O94788 518 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 SERPINE1P05121 402 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 RBL1P28749 1068 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 GSTT1P30711 240 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 NR2C2P49116 596 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 MED21Q13503 144 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 TUBB3Q13509 450 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 FASTKD1Q53R41 847 aaKnown RBP16.82■□□□□ 0.28
SHMT2-231ENST00000557433 RASIP1Q5U651 963 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 CES4AQ5XG92 561 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 MBLAC2Q68D91 279 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 PGM2L1Q6PCE3 622 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 RASSF3Q86WH2 238 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 ZNF280CQ8ND82 737 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 CDKL2Q92772 493 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 BTBD9Q96Q07 612 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 KLHL4Q9C0H6 718 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 RPF1Q9H9Y2 349 aaKnown RBP16.82■□□□□ 0.28
SHMT2-231ENST00000557433 PPM1HQ9ULR3 514 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 CCDC195A0A1B0GUA6 201 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 TTLL13PA6NNM8 815 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 PDLIM1O00151 329 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 CYB561D2O14569 222 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 KITP10721 976 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 ACAT1P24752 427 aaKnown RBP16.82■□□□□ 0.28
SHMT2-231ENST00000557433 RPS6KA3P51812 740 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 NRLP54845 237 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 SNX16P57768 344 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 LAMTOR4Q0VGL1 99 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 BMPR2Q13873 1038 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 GRM2Q14416 872 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 TMEM132BQ14DG7 1078 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 DCAF15Q66K64 600 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 PQLC3Q8N755 202 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 CHST13Q8NET6 341 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 TUBGCP5Q96RT8 1024 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 PCYT2Q99447 389 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 EPB41L1Q9H4G0 881 aa16.82■□□□□ 0.28
SHMT2-231ENST00000557433 RLFQ13129 1914 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 SMIM31A0A1B0GVY4 71 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 HMX2A2RU54 273 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 ARHGAP42A6NI28 874 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 PABPC4LP0CB38 370 aaKnown RBP16.81■□□□□ 0.28
SHMT2-231ENST00000557433 CCDC130P13994 396 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 UQCRBP14927 111 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 IL4RP24394 825 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 SEMA5AQ13591 1074 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 TEDDM1Q5T9Z0 273 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 ATF7IP2Q5U623 682 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 RFX8Q6ZV50 586 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 ADGRF2Q8IZF7 708 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 TTLL6Q8N841 843 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 CLPTM1LQ96KA5 538 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 HAPLN3Q96S86 360 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 ELOVL4Q9GZR5 314 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 PRDM16Q9HAZ2 1276 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 PCDH18Q9HCL0 1135 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 STK32BQ9NY57 414 aa16.81■□□□□ 0.28
SHMT2-231ENST00000557433 MARCOQ9UEW3 520 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-231ENST00000557433 DOCK1Q14185 1865 aa16.8■□□□□ 0.28
SHMT2-231ENST00000557433 IGKV6-21A0A0C4DH24 114 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms