RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 EIF3CQ99613 913 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 DDX50Q9BQ39 737 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 DDX23Q9BUQ8 820 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 TRMT61BQ9BVS5 477 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 RNF38Q9H0F5 515 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 KCNK12Q9HB15 430 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 TRPV5Q9NQA5 729 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 OSER1Q9NX31 292 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 UVRAGQ9P2Y5 699 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 LIMD1Q9UGP4 676 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 RASAL2Q9UJF2 1139 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 TLR6Q9Y2C9 796 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 CPQQ9Y646 472 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 OBSL1O75147 1896 aa18.28■□□□□ 0.52
CLSTN3-210ENST00000540931 HEPACAM2A8MVW5 462 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 TMCO5BA8MYB1 307 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 CHADO15335 359 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 PTPN9P43378 593 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 NHLH1Q02575 133 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 NR1H3Q13133 447 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 PDGFRLQ15198 375 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 TRIP4Q15650 581 aaPredicted RBP18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 STXBP5Q5T5C0 1151 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 DEFB106AQ8N104 65 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 SH3RF2Q8TEC5 729 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 CLEC4CQ8WTT0 213 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 MSANTD3Q96H12 275 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 CYP2S1Q96SQ9 504 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 CHP1Q99653 195 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 KLF16Q9BXK1 252 aaPredicted RBP18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 KCNH6Q9H252 994 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 CNOT8Q9UFF9 292 aaKnown RBP18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 TMEM59LQ9UK28 342 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 SORCS3Q9UPU3 1222 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 EPN1Q9Y6I3 576 aaPredicted RBP18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 NUMBLQ9Y6R0 609 aa18.27■□□□□ 0.52
CLSTN3-210ENST00000540931 DOCK6Q96HP0 2047 aa18.27■□□□□ 0.51
CLSTN3-210ENST00000540931 DOCK8Q8NF50 2099 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 GOLGA8SH3BPF8 625 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 LEFTY2O00292 366 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 ZNF263O14978 683 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 TRUB2O95900 331 aaKnown RBP18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 APOEP02649 317 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 TMEM253P0C7T8 217 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 PDGFRAP16234 1089 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 CHKAP35790 457 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 MLLT6P55198 1093 aaPredicted RBP18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 GFPT1Q06210 699 aaPredicted RBP18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 USP4Q13107 963 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 TANGO2Q6ICL3 276 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 HTR3DQ70Z44 454 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 STRADAQ7RTN6 431 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 GPIHBP1Q8IV16 184 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 RHOT2Q8IXI1 618 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 EDEM1Q92611 657 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 NT5C3BQ969T7 300 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 ZNF318Q5VUA4 2279 aa18.26■□□□□ 0.51
CLSTN3-210ENST00000540931 SLC12A8A0AV02 714 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 ARHGAP6O43182 974 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 NDUFA10O95299 355 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 GLULP15104 373 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 RRM1P23921 792 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 CCR1P32246 355 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 SLC11A2P49281 568 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 AIF1P55008 147 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 TBX4P57082 545 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 RNASE9P60153 205 aaKnown RBP18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 MAMLD1Q13495 774 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 MTF1Q14872 753 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 ZNF77Q15935 545 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 BRMS1LQ5PSV4 323 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 PARM1Q6UWI2 310 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 HFE2Q6ZVN8 426 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 MIB1Q86YT6 1006 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 OLIG1Q8TAK6 271 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 FEZF2Q8TBJ5 459 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 DQX1Q8TE96 717 aaKnown RBP18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 OSCP1Q8WVF1 389 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 UBE2Q2Q8WVN8 375 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 DNASE1L2Q92874 299 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 FGF14Q92915 247 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 ATP2A3Q93084 1043 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 FAM204AQ9H8W3 233 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 METTL5Q9NRN9 209 aaKnown RBP18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 TAS2R14Q9NYV8 317 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 TJP2Q9UDY2 1190 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 NENFQ9UMX5 172 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 NAALADL1Q9UQQ1 740 aa18.25■□□□□ 0.51
CLSTN3-210ENST00000540931 C2CD4BA6NLJ0 364 aa18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 RNF8O76064 485 aa18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 NFATC1O95644 943 aa18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 CYP1A2P05177 515 aa18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 FYNP06241 537 aa18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 PTMAP06454 111 aaKnown RBP18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 SRFP11831 508 aa18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 ABCB4P21439 1286 aa18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 GPD1P21695 349 aa18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 SP100P23497 879 aaPredicted RBP18.24■□□□□ 0.51
CLSTN3-210ENST00000540931 FCARP24071 287 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms