RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 TAP1Q03518 808 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 SNAPC2Q13487 334 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 PDE1CQ14123 709 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 ARCQ7LC44 396 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 LRRN4Q8WUT4 740 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 XPNPEP1Q9NQW7 623 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 FBXO28Q9NVF7 368 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 BCAP29Q9UHQ4 241 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 TTLL3Q9Y4R7 772 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 H0YIN7 160 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 APOC4-APOC2K7ER74 178 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 NEMP1O14524 444 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 EXTL3O43909 919 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 STAMBPO95630 424 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 APOEP02649 317 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 APOC2P02655 101 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 COX4I1P13073 169 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 PSMC3P17980 439 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 ACO1P21399 889 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 PKNOX1P55347 436 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 DUS1LQ6P1R4 473 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 KLHL35Q6PF15 583 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 THNSL1Q8IYQ7 743 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 PHTF2Q8N3S3 785 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 USP13Q92995 863 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 EME1Q96AY2 570 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 NUF2Q9BZD4 464 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 DBNDD1Q9H9R9 158 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 RSL24D1Q9UHA3 163 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 TELO2Q9Y4R8 837 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 HSPA4LO95757 839 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 IL1R2P27930 398 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 SLC5A2P31639 672 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 MMRN1Q13201 1228 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 NRF1Q16656 503 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 CDO1Q16878 200 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 TKFCQ3LXA3 575 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 KCTD21Q4G0X4 260 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 SCYL2Q6P3W7 929 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 TRMT10BQ6PF06 316 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 HHIPL2Q6UWX4 724 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 SH2D5Q6ZV89 423 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 PATL1Q86TB9 770 aaKnown RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 NLRP7Q8WX94 980 aa13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 FRMD8P1Q9BZ68 369 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 SEPT9Q9UHD8 586 aaPredicted RBP13.26□□□□□ -0.29
SFSWAP-209ENST00000540469 GOLGA8QA0A0J9YX86 632 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 GOLGA8OA6NCC3 632 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 GOLGA8NF8WBI6 632 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 BIRC5O15392 142 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 LRCH4O75427 683 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 GARTP22102 1010 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 PSMD6Q15008 389 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 TAF5Q15542 800 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 OGFRL1Q5TC84 451 aaPredicted RBP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 DEFB132Q7Z7B7 95 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 HOMEZQ8IX15 550 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 NUP93Q8N1F7 819 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 ZBTB8BQ8NAP8 495 aaPredicted RBP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 JOSD2Q8TAC2 188 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 CDRT15Q96T59 188 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 MAF1Q9H063 256 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 FAM96AQ9H5X1 160 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 RAB26Q9ULW5 256 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 CTDP1Q9Y5B0 961 aaPredicted RBP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 HEMK1Q9Y5R4 338 aaPredicted RBP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 LRRIQ4A6NIV6 560 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 SNNO75324 88 aaPredicted RBP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 IDH3AP50213 366 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 NXNQ6DKJ4 435 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 AHI1Q8N157 1196 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 TSPAN14Q8NG11 270 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 FBXL18Q96ME1 805 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 DCUN1D5Q9BTE7 237 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 MSTO1Q9BUK6 570 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 RRN3Q9NYV6 651 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 PAK5Q9P286 719 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 RGS17Q9UGC6 210 aaPredicted RBP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 SSX2IPQ9Y2D8 614 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 DENRO43583 198 aaKnown RBP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 CRHR1P34998 444 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 MYBPC1Q00872 1141 aa13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 TFB1MQ8WVM0 346 aaKnown RBP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 AGO4Q9HCK5 861 aaKnown RBP13.25□□□□□ -0.29
SFSWAP-209ENST00000540469 ZNF536O15090 1300 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 VNN1O95497 513 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 SERPINE1P05121 402 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 PTPN7P35236 360 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 CCR3P51677 355 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 RPL26P61254 145 aaKnown RBP13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 SPP2Q13103 211 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 TRPC3Q13507 836 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 PGM2L1Q6PCE3 622 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 ANKRD23Q86SG2 305 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 KBTBD6Q86V97 674 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 C4orf19Q8IY42 314 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 RNPEPQ9H4A4 650 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 SMYD2Q9NRG4 433 aa13.24□□□□□ -0.29
SFSWAP-209ENST00000540469 TBC1D22BQ9NU19 505 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms