RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, human

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13A-213	ENST00000539950	FSTL5	Q8N475	847 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950	IPCEF1	Q8WWN9	437 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950	CAMK1G	Q96NX5	476 aa		4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950	TRMO	Q9BU70	441 aa		4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950	CINP	Q9BW66	212 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950	AGO4	Q9HCK5	861 aa	Known RBP	4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950	TCEAL9	Q9UHQ7	104 aa		4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950	SIRT4	Q9Y6E7	314 aa	Predicted RBP	4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950	SPATA31A1	Q5TZJ5	1347 aa		4.2	□□□□□ -1.74
VPS13A-213	ENST00000539950		B4DGG1	531 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	WDR47	O94967	919 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	FGF2	P09038	288 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	THBS3	P49746	956 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	HTR6	P50406	440 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	JAK3	P52333	1124 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	FAM193A	P78312	1265 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	RAE1	P78406	368 aa	Known RBP	4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	ACOX1	Q15067	660 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	AASDH	Q4L235	1098 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	MIDN	Q504T8	468 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	PIM3	Q86V86	326 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	P3H2	Q8IVL5	708 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	SUN3	Q8TAQ9	357 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	JDP2	Q8WYK2	163 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	TRMT61A	Q96FX7	289 aa	Known RBP	4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	MARK4	Q96L34	752 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	FAM227B	Q96M60	508 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	FCRL5	Q96RD9	977 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	FAM234A	Q9H0X4	552 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	ARL8B	Q9NVJ2	186 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	PCDHGB6	Q9Y5F9	930 aa		4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	TTBK1	Q5TCY1	1321 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	FRMPD2	Q68DX3	1309 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS13A-213	ENST00000539950	SLC22A23	A1A5C7	686 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	TSPAN6	O43657	245 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	TULP3	O75386	442 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	HOXA7	P31268	230 aa	Predicted RBP	4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	PBX1	P40424	430 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	SEMA5A	Q13591	1074 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	GPR162	Q16538	588 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	RRAGB	Q5VZM2	374 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	PPP4R4	Q6NUP7	873 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	ZNF793	Q6ZN11	406 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	MMP21	Q8N119	569 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	BRIP1	Q9BX63	1249 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	ZCWPW1	Q9H0M4	648 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	SLC25A32	Q9H2D1	315 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	TMEM45A	Q9NWC5	275 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	VPS4A	Q9UN37	437 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950	PCDHB2	Q9Y5E7	798 aa		4.18	□□□□□ -1.74
VPS13A-213	ENST00000539950		A0A087WZ62	844 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	GOLGA6C	A6NDK9	693 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	GOLGA6B	A6NDN3	693 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	CD63	P08962	238 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	GOLGA6D	P0CG33	693 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	CBSL	P0DN79	551 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	IDUA	P35475	653 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	CBS	P35520	551 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	GBX1	Q14549	363 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	CYB5RL	Q6IPT4	315 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	RNF44	Q7L0R7	432 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	MYO1H	Q8N1T3	1032 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	PELI3	Q8N2H9	469 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	PIGK	Q92643	395 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	STRBP	Q96SI9	672 aa	Known RBP	4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	APOL5	Q9BWW9	433 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	SEMA4B	Q9NPR2	832 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	GOLGA6A	Q9NYA3	693 aa		4.17	□□□□□ -1.74
VPS13A-213	ENST00000539950	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	FAM90A8P	A6NJQ4	464 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	CBFA2T3	O75081	653 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	ANXA2	P07355	339 aa	Known RBP	4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	FAM90A13P	P0C7W8	464 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	FAM90A24P	P0C7X0	464 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	ST6GAL1	P15907	406 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	RHCE	P18577	417 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	RPS6KB1	P23443	525 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	ATIC	P31939	592 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	B4GALNT1	Q00973	533 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	RHD	Q02161	417 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	KIAA1161	Q6NSJ0	714 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	ZNF549	Q6P9A3	640 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	RBM44	Q6ZP01	1051 aa	Known RBP	4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	FAM57B	Q71RH2	274 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	SDR16C5	Q8N3Y7	309 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	ACRBP	Q8NEB7	543 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	MPLKIP	Q8TAP9	179 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	TSR2	Q969E8	191 aa	Known RBP	4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	P2RY11	Q96G91	374 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	LYZL4	Q96KX0	146 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	GATA5	Q9BWX5	397 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	BTBD1	Q9H0C5	482 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	ABHD10	Q9NUJ1	306 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	HEMK1	Q9Y5R4	338 aa	Predicted RBP	4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	CNTNAP2	Q9UHC6	1331 aa		4.16	□□□□□ -1.74
VPS13A-213	ENST00000539950	IGLV5-39	A0A0G2JS06	123 aa		4.15	□□□□□ -1.75
VPS13A-213	ENST00000539950	ZNF814	B7Z6K7	855 aa		4.15	□□□□□ -1.75
VPS13A-213	ENST00000539950	PRY	O14603	147 aa		4.15	□□□□□ -1.75

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