RNA–Protein interactions for RNA: ENST00000532370.1

CTSB-223, Transcript of cathepsin B, human

TSL 2

Gene CTSB, Length 693 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSB-223	ENST00000532370	TEX33	O43247	280 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	HOXC11	O43248	304 aa	Predicted RBP	18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	GFPT2	O94808	682 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	TDGF1	P13385	188 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	CXCL12	P48061	93 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	BPIFB4	P59827	614 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	KDSR	Q06136	332 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	TRIP4	Q15650	581 aa	Predicted RBP	18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	SMYD5	Q6GMV2	418 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	NOP9	Q86U38	636 aa	Known RBP	18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	ETFBKMT	Q8IXQ9	262 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	DDX1	Q92499	740 aa	Known RBP	18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	FAM149B1	Q96BN6	582 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	PPP1R13B	Q96KQ4	1090 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	PCMTD1	Q96MG8	357 aa	Predicted RBP	18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	IER2	Q9BTL4	223 aa		18.2	■□□□□ 0.5
CTSB-223	ENST00000532370	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	NEDD8-MDP1	E9PL57	170 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	ERBB2	P04626	1255 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	NCAM1	P13591	858 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	PTMS	P20962	102 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	NBL1	P41271	181 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	CCR3	P51677	355 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	SEC13	P55735	322 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	JAM2	P57087	298 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	DMWD	Q09019	674 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	ZSCAN23	Q3MJ62	389 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	SYPL2	Q5VXT5	272 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	MSANTD2	Q6P1R3	559 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	PHTF2	Q8N3S3	785 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	ADAM32	Q8TC27	787 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	GOLGA1	Q92805	767 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	EXOC4	Q96A65	974 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	PLD4	Q96BZ4	506 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	ERGIC2	Q96RQ1	377 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	PNKP	Q96T60	521 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	BBS2	Q9BXC9	721 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	CBX8	Q9HC52	389 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	PLK2	Q9NYY3	685 aa		18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	HBS1L	Q9Y450	684 aa	Known RBP	18.19	■□□□□ 0.5
CTSB-223	ENST00000532370	TULP3	O75386	442 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	KAT7	O95251	611 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	TYR	P14679	529 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	ZNF528	Q3MIS6	628 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	PTPN20	Q4JDL3	420 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	LUZP1	Q86V48	1076 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	ALYREF	Q86V81	257 aa	Known RBP	18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	NEK11	Q8NG66	645 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	RPLP0P6	Q8NHW5	317 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	EPS8L1	Q8TE68	723 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	DQX1	Q8TE96	717 aa	Known RBP	18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	SLC20A1	Q8WUM9	679 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	DCLK3	Q9C098	648 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	PDCL3	Q9H2J4	239 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	RTN4	Q9NQC3	1192 aa	Known RBP	18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	ARHGEF4	Q9NR80	690 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	MARK1	Q9P0L2	795 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	ZNF510	Q9Y2H8	683 aa		18.18	■□□□□ 0.5
CTSB-223	ENST00000532370	PIEZO1	Q92508	2521 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370		K7ESF4	209 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	SART1	O43290	800 aa	Known RBP	18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	MME	P08473	750 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	SOX5	P35711	763 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	EIF2D	P41214	584 aa	Known RBP	18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	HARS2	P49590	506 aa	Known RBP	18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	FBXO43	Q4G163	708 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	C2orf27A	Q580R0	203 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	EMC10	Q5UCC4	262 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	FAM183BP	Q6ZVS7	135 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	NELL1	Q92832	810 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	NAP1L5	Q96NT1	182 aa	Predicted RBP	18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	ZDHHC4	Q9NPG8	344 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	DNAJC17	Q9NVM6	304 aa	Known RBP	18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	WDR35	Q9P2L0	1181 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	DEC1	Q9P2X7	70 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	NOCT	Q9UK39	431 aa	Known RBP	18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	MYO16	Q9Y6X6	1858 aa		18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	HELZ	P42694	1942 aa	Known RBP	18.17	■□□□□ 0.5
CTSB-223	ENST00000532370	WDR87	Q6ZQQ6	2873 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370		A0A0A0MRY4	1105 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	CHURC1-FNTB	B4DL54	471 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	GRAP2	O75791	330 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	IGLV3-27	P01718	113 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	APOD	P05090	189 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	CHRM1	P11229	460 aa	Predicted RBP	18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	CHRNB2	P17787	502 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	GRIA2	P42262	883 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	MRE11	P49959	708 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	YWHAZ	P63104	245 aa	Known RBP	18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	PITX1	P78337	314 aa	Predicted RBP	18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	FYB2	Q5VWT5	728 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	HEATR6	Q6AI08	1181 aa	Known RBP	18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	OR6B2	Q6IFH4	312 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	TOGARAM2	Q6ZUX3	1019 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	TAC4	Q86UU9	113 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	TMEM35B	Q8NCS4	154 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	USP33	Q8TEY7	942 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	NOX5	Q96PH1	765 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	SPAG5	Q96R06	1193 aa		18.16	■□□□□ 0.5
CTSB-223	ENST00000532370	POPDC2	Q9HBU9	364 aa		18.16	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms