RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ZNF571Q7Z3V5 609 aaPredicted RBP14.89□□□□□ -0.03
NUP54-216ENST00000514901 UNC45BQ8IWX7 931 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 OR8K1Q8NGG5 319 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 SLC30A5Q8TAD4 765 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 VCPIP1Q96JH7 1222 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 SERPINB11Q96P15 392 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 SLC2A13Q96QE2 648 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 DDX23Q9BUQ8 820 aaKnown RBP14.89□□□□□ -0.03
NUP54-216ENST00000514901 HPS4Q9NQG7 708 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 ZNHIT6Q9NWK9 470 aaKnown RBP14.89□□□□□ -0.03
NUP54-216ENST00000514901 GTSE1Q9NYZ3 720 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 ADAM22Q9P0K1 906 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 SFMBT1Q9UHJ3 866 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 NAALADL1Q9UQQ1 740 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 PIAS3Q9Y6X2 628 aa14.89□□□□□ -0.03
NUP54-216ENST00000514901 STK25O00506 426 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 GREM1O60565 184 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 LATS1O95835 1130 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 ADH1CP00326 375 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 SKILP12757 684 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 ARSAP15289 507 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 NOS2P35228 1153 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 CHKAP35790 457 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 CLCN5P51795 746 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 GSCP56915 257 aaPredicted RBP14.88□□□□□ -0.03
NUP54-216ENST00000514901 RING1Q06587 406 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 C1QBPQ07021 282 aaKnown RBP14.88□□□□□ -0.03
NUP54-216ENST00000514901 TAF5Q15542 800 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 DCAF6Q58WW2 860 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 E4F1Q66K89 784 aaPredicted RBP14.88□□□□□ -0.03
NUP54-216ENST00000514901 NUGGCQ68CJ6 796 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 Q6ZNB5 142 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 TPRG1Q6ZUI0 275 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 DEFB106AQ8N104 65 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 DQX1Q8TE96 717 aaKnown RBP14.88□□□□□ -0.03
NUP54-216ENST00000514901 AZIN2Q96A70 460 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 MRFAP1L1Q96HT8 127 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 OSBPL6Q9BZF3 934 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.88□□□□□ -0.03
NUP54-216ENST00000514901 TLR6Q9Y2C9 796 aa14.88□□□□□ -0.03
NUP54-216ENST00000514901 KIF26AQ9ULI4 1882 aaPredicted RBP14.87□□□□□ -0.03
NUP54-216ENST00000514901 KANSL1LA0AUZ9 987 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 SPECC1L-ADORA2AF8WAN1 911 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 NCAM2O15394 837 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 AP5Z1O43299 807 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 DAB1O75553 588 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 TRUB2O95900 331 aaKnown RBP14.87□□□□□ -0.03
NUP54-216ENST00000514901 HMBSP08397 361 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 SLC2A3P11169 496 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 CORO1AP31146 461 aaKnown RBP14.87□□□□□ -0.03
NUP54-216ENST00000514901 MATKP42679 507 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 ZNF75DP51815 510 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 TBX4P57082 545 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 MTA1Q13330 715 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 ARID5BQ14865 1188 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 DHCR24Q15392 516 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 TDRD12Q587J7 1177 aaKnown RBP14.87□□□□□ -0.03
NUP54-216ENST00000514901 FAM102AQ5T9C2 384 aaPredicted RBP14.87□□□□□ -0.03
NUP54-216ENST00000514901 SYPL2Q5VXT5 272 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 HGSNATQ68CP4 663 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 CNGA4Q8IV77 575 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 BBS7Q8IWZ6 715 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 SUGP1Q8IWZ8 645 aaKnown RBP14.87□□□□□ -0.03
NUP54-216ENST00000514901 FBXL6Q8N531 539 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 FAM3CQ92520 227 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 WBP2Q969T9 261 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 PIWIL1Q96J94 861 aaKnown RBP14.87□□□□□ -0.03
NUP54-216ENST00000514901 DNAJC7Q99615 494 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 C11orf70Q9BRQ4 267 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 TBC1D17Q9HA65 648 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 C11orf16Q9NQ32 467 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 STAP1Q9ULZ2 295 aa14.87□□□□□ -0.03
NUP54-216ENST00000514901 OTOL1A6NHN0 477 aaPredicted RBP14.86□□□□□ -0.03
NUP54-216ENST00000514901 DDX3XO00571 662 aaKnown RBP eCLIP14.86□□□□□ -0.033e-11■■□□□ 12
NUP54-216ENST00000514901 GRAP2O75791 330 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 IGLV3-25P01717 112 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 IGLV3-27P01718 113 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 KLKB1P03952 638 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 CTHP32929 405 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 GJA4P35212 333 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 SLC11A2P49281 568 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 RNASE9P60153 205 aaKnown RBP14.86□□□□□ -0.03
NUP54-216ENST00000514901 GAD2Q05329 585 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 PTP4A2Q12974 167 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 TBX2Q13207 712 aaPredicted RBP14.86□□□□□ -0.03
NUP54-216ENST00000514901 IER5LQ5T953 404 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 ASTLQ6HA08 431 aaPredicted RBP14.86□□□□□ -0.03
NUP54-216ENST00000514901 RHBDF2Q6PJF5 856 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 MON1BQ7L1V2 547 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 TMC6Q7Z403 805 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 TAC4Q86UU9 113 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 DENND1CQ8IV53 801 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 MCOLN2Q8IZK6 566 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 FLCNQ8NFG4 579 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 TTC8Q8TAM2 541 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 DDX50Q9BQ39 737 aaKnown RBP14.86□□□□□ -0.03
NUP54-216ENST00000514901 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.86□□□□□ -0.03
NUP54-216ENST00000514901 IRX2Q9BZI1 471 aaPredicted RBP14.86□□□□□ -0.03
NUP54-216ENST00000514901 SPHK2Q9NRA0 654 aa14.86□□□□□ -0.03
NUP54-216ENST00000514901 SLC12A6Q9UHW9 1150 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms