RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 DHDDSQ86SQ9 333 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 EFHBQ8N7U6 833 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 TMEM176AQ96HP8 235 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 ZNF317Q96PQ6 595 aaPredicted RBP13.54□□□□□ -0.24
TCOF1-213ENST00000514442 PCYOX1Q9UHG3 505 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 ZNF180Q9UJW8 692 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 SOX13Q9UN79 622 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 PEX11AO75192 247 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 MAPTP10636 758 aaKnown RBP13.54□□□□□ -0.24
TCOF1-213ENST00000514442 GZMAP12544 262 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 BGNP21810 368 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 RAP1GDS1P52306 607 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 AQP5P55064 265 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 MAP3K7CLP57077 242 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 PDK4Q16654 411 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 TLK2Q86UE8 772 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 SLC51AQ86UW1 340 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 SYT15Q9BQS2 421 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 TTYH3Q9C0H2 523 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 ZC4H2Q9NQZ6 224 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 KRT82Q9NSB4 513 aa13.54□□□□□ -0.24
TCOF1-213ENST00000514442 LSM1O15116 133 aaKnown RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 CDH8P55286 799 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 BEX3Q00994 111 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 RIPOR1Q6ZS17 1223 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 VSIG10LQ86VR7 867 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 RASGEF1CQ8N431 466 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 SPIRE2Q8WWL2 714 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 RRN3Q9NYV6 651 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 KPNA4O00629 521 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 MIB1Q86YT6 1006 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 ULK4Q96C45 1275 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 ARMCX1Q9P291 453 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 SUN2Q9UH99 717 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 HBS1LQ9Y450 684 aaKnown RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 AKAP12Q02952 1782 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 POMCP01189 267 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 ENO3P13929 434 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 ACAT1P24752 427 aaKnown RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 XIAPP98170 497 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 MYBPC2Q14324 1141 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 TMEM132BQ14DG7 1078 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 PKN2Q16513 984 aaKnown RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 BOLA3Q53S33 107 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 FAM131BQ86XD5 332 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 PYDC1Q8WXC3 89 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 KAT5Q92993 513 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 PRPF18Q99633 342 aaKnown RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 TMEM109Q9BVC6 243 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 ORC6Q9Y5N6 252 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 CASZ1Q86V15 1759 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 PPP1R11O60927 126 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 SNRPAP09012 282 aaKnown RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 UQCRBP14927 111 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 RPA3P35244 121 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 ECM1Q16610 540 aa13.53□□□□□ -0.24
TCOF1-213ENST00000514442 C20orf96Q9NUD7 363 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-213ENST00000514442 YDJCA8MPS7 323 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 GSC2O15499 205 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 THP07101 528 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 FGRP09769 529 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 CCNB1P14635 433 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 MAP4K3Q8IVH8 894 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 WDCPQ9H6R7 721 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 PTTG2Q9NZH5 202 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 SALL4Q9UJQ4 1053 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 ADCY6O43306 1168 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 ALADP13716 330 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 NR1H2P55055 460 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 OTUD4Q01804 1114 aaKnown RBP13.52□□□□□ -0.24
TCOF1-213ENST00000514442 KHDC1Q4VXA5 237 aaKnown RBP13.52□□□□□ -0.24
TCOF1-213ENST00000514442 COBLL1Q53SF7 1204 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 DENND5BQ6ZUT9 1274 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 PPIL6Q8IXY8 311 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 ZNF786Q8N393 782 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 GIPC3Q8TF64 312 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 DNAJC19Q96DA6 116 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 HES6Q96HZ4 224 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 ACP6Q9NPH0 428 aa13.52□□□□□ -0.24
TCOF1-213ENST00000514442 LSM7Q9UK45 103 aaKnown RBP13.52□□□□□ -0.24
TCOF1-213ENST00000514442 PIK3CDO00329 1044 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 SPAG6O75602 509 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 ATXN3P54252 364 aaPredicted RBP13.52□□□□□ -0.25
TCOF1-213ENST00000514442 RAD51Q06609 339 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 MFSD10Q14728 455 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 TATDN1Q6P1N9 297 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 ABRAQ8N0Z2 381 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 ELMO2Q96JJ3 720 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 MMTAG2Q9BU76 263 aaKnown RBP13.52□□□□□ -0.25
TCOF1-213ENST00000514442 AK5Q9Y6K8 562 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 LACTBL1A8MY62 500 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 EDF1O60869 148 aaKnown RBP13.52□□□□□ -0.25
TCOF1-213ENST00000514442 PROSCO94903 275 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 CYBBP04839 570 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 ITGA2BP08514 1039 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 ITGB5P18084 799 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 ALDH7A1P49419 539 aaKnown RBP13.52□□□□□ -0.25
TCOF1-213ENST00000514442 NDST1P52848 882 aa13.52□□□□□ -0.25
TCOF1-213ENST00000514442 USP10Q14694 798 aaKnown RBP13.52□□□□□ -0.25
TCOF1-213ENST00000514442 EFTUD2Q15029 972 aaKnown RBP eCLIP13.52□□□□□ -0.252e-6■■■■■ 57.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms