RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CDRT15Q96T59 188 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 C1orf50Q9BV19 199 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 TRPV6Q9H1D0 765 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 RPAP3Q9H6T3 665 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 GREM2Q9H772 168 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 NEK6Q9HC98 313 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 SEPT3Q9UH03 358 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 ANAPC7Q9UJX3 599 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 DGKBQ9Y6T7 804 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 TNRQ92752 1358 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 LAMB4A4D0S4 1761 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 ZNF839A8K0R7 811 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CENPBD1B2RD01 187 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 MSI1O43347 362 aaKnown RBP12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CALUO43852 315 aaPredicted RBP12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 PDE8BO95263 885 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 AKR1B1P15121 316 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CCNA2P20248 432 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 OPRL1P41146 370 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 RAD23AP54725 363 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 MLLT10P55197 1068 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CLCQ05315 142 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 NFATC3Q12968 1075 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 MGAT5BQ3V5L5 792 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 FAM47CQ5HY64 1035 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 AGAP7PQ5VUJ5 663 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 BTBD8Q5XKL5 378 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 FOXR2Q6PJQ5 311 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 PPP4R3CPQ6ZMV5 832 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 RHPN2Q8IUC4 686 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 LSMEM1Q8N8F7 131 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 KBTBD7Q8WVZ9 684 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 PMEPA1Q969W9 287 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CMTM5Q96DZ9 223 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 NLRP4Q96MN2 994 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CITED4Q96RK1 184 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 PCDHB18PQ96TA0 734 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 GPR88Q9GZN0 384 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 BARHL2Q9NY43 387 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 PCDHA2Q9Y5H9 948 aa12.42□□□□□ -0.42
LIMCH1-213ENST00000511496 CLUHO75153 1309 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 SLIT3O75094 1523 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 SYCE1LA8MT33 242 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 A8MX80 341 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 AURKAO14965 403 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 CLASP2O75122 1294 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 SPAG6O75602 509 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 RNASEH2AO75792 299 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 MFN2O95140 757 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 MYCP01106 439 aaPredicted RBP12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 ERBB2P04626 1255 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 INHBAP08476 426 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 MSL3P1P0C860 447 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 GLRA2P23416 452 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 POLR2BP30876 1174 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 MAPK4P31152 587 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 KRT6CP48668 564 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 HADHBP55084 474 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 DLG4P78352 724 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 BASP1P80723 227 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 PPP2R2BQ00005 443 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 CDONQ4KMG0 1287 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 CBWD6Q4V339 395 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 CBWD3Q5JTY5 395 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 CBWD5Q5RIA9 395 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 VWA5B1Q5TIE3 1220 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 POTEAQ6S8J7 498 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 POLNQ7Z5Q5 900 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 CTAGE3PQ8IX95 158 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 TGFBRAP1Q8WUH2 860 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 VPS35Q96QK1 796 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 PSD2Q9BQI7 771 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 BCAS3Q9H6U6 928 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 HOMER2Q9NSB8 354 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 KLHL11Q9NVR0 708 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 AFDNP55196 1824 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 TOR1BO14657 336 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 IDH3BO43837 385 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 ENTPD3O75355 529 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 BMP3P12645 472 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 KRT5P13647 590 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 NUDT2P50583 147 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 P2RX3P56373 397 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 HIF1AQ16665 826 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 PNMA1Q8ND90 353 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 HTRA1Q92743 480 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 C7orf26Q96N11 449 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 OSBPL11Q9BXB4 747 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 INTS2Q9H0H0 1204 aaKnown RBP12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 UCKL1Q9NWZ5 548 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 USTQ9Y2C2 406 aa12.41□□□□□ -0.42
LIMCH1-213ENST00000511496 IQANK1A0A1B0GTG1 560 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 ARHGAP33O14559 1287 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 HOXC11O43248 304 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 ZNF26P17031 533 aaPredicted RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 GRIA3P42263 894 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 RACK1P63244 317 aaKnown RBP12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 CREB5Q02930 508 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 PTK2BQ14289 1009 aa12.4□□□□□ -0.42
LIMCH1-213ENST00000511496 SUZ12Q15022 739 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms