RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ERBB2P04626 1255 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 RING1Q06587 406 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 FZD5Q13467 585 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 UBXN2BQ14CS0 331 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 DHCR24Q15392 516 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 TMEM196Q5HYL7 178 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 EFHC1Q5JVL4 640 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 TAF3Q5VWG9 929 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 MSANTD4Q8NCY6 345 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 EDEM1Q92611 657 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 PIWIL1Q96J94 861 aaKnown RBP16.6■□□□□ 0.25
UPF3A-208ENST00000484246 PDCL3Q9H2J4 239 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 POPDC2Q9HBU9 364 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 STOML2Q9UJZ1 356 aa16.6■□□□□ 0.25
UPF3A-208ENST00000484246 SLC12A8A0AV02 714 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 KLKB1P03952 638 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 TPM3P06753 285 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 IRF1P10914 325 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 CHRNB1P11230 501 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 CD72P21854 359 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 PRKCIP41743 596 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 GSCP56915 257 aaPredicted RBP16.59■□□□□ 0.25
UPF3A-208ENST00000484246 YWHAZP63104 245 aaKnown RBP16.59■□□□□ 0.25
UPF3A-208ENST00000484246 CCINQ13939 588 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 DGKKQ5KSL6 1271 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 RHBDF2Q6PJF5 856 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 MAMSTRQ6ZN01 415 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 FAM183BPQ6ZVS7 135 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 IRF2BP2Q7Z5L9 587 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 CPXM2Q8N436 756 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 TTC16Q8NEE8 873 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 OLIG1Q8TAK6 271 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 DQX1Q8TE96 717 aaKnown RBP16.59■□□□□ 0.25
UPF3A-208ENST00000484246 FAM149B1Q96BN6 582 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 SERPINB11Q96P15 392 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 CHRDQ9H2X0 955 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 AIPL1Q9NZN9 384 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 IFNKQ9P0W0 207 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 MTF2Q9Y483 593 aaPredicted RBP16.59■□□□□ 0.25
UPF3A-208ENST00000484246 ZDBF2Q9HCK1 2354 aa16.59■□□□□ 0.25
UPF3A-208ENST00000484246 ZNF318Q5VUA4 2279 aa16.58■□□□□ 0.25
UPF3A-208ENST00000484246 LRRC53A6NM62 1247 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 DAB1O75553 588 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 ADH5P11766 374 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 UNGP13051 313 aaPredicted RBP16.58■□□□□ 0.24
UPF3A-208ENST00000484246 NCAM1P13591 858 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 MMP8P22894 467 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 CORO1AP31146 461 aaKnown RBP16.58■□□□□ 0.24
UPF3A-208ENST00000484246 OPRD1P41143 372 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 SLC6A3Q01959 620 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 CENPCQ03188 943 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 EIF4EBP2Q13542 120 aaPredicted RBP16.58■□□□□ 0.24
UPF3A-208ENST00000484246 LRRC32Q14392 662 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 NAA35Q5VZE5 725 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 ARCQ7LC44 396 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 ERICH1Q86X53 443 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 ETFBKMTQ8IXQ9 262 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 SYNPOQ8N3V7 929 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 DTWD2Q8NBA8 298 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 TTC8Q8TAM2 541 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 AZIN2Q96A70 460 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 C18orf8Q96DM3 657 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 SLC39A13Q96H72 371 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 IRX2Q9BZI1 471 aaPredicted RBP16.58■□□□□ 0.24
UPF3A-208ENST00000484246 NUCKS1Q9H1E3 243 aaKnown RBP16.58■□□□□ 0.24
UPF3A-208ENST00000484246 SYNCQ9H7C4 482 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 SPHK2Q9NRA0 654 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 HCN4Q9Y3Q4 1203 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 KMT2EQ8IZD2 1858 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 TICRRQ7Z2Z1 1910 aa16.58■□□□□ 0.24
UPF3A-208ENST00000484246 GFRA2O00451 464 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 STK25O00506 426 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 SCAMP3O14828 347 aaKnown RBP16.57■□□□□ 0.24
UPF3A-208ENST00000484246 IRAK2O43187 625 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 CBFA2T2O43439 604 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 GALR2O43603 387 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-208ENST00000484246 DRD1P21728 446 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 CHKAP35790 457 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 GAD2Q05329 585 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 CLEC16AQ2KHT3 1053 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 LY6G5CQ5SRR4 150 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 E4F1Q66K89 784 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-208ENST00000484246 NUGGCQ68CJ6 796 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 TAC4Q86UU9 113 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 XYLT1Q86Y38 959 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 PHF13Q86YI8 300 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-208ENST00000484246 SYN2Q92777 582 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-208ENST00000484246 CD101Q93033 1021 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 PCDHB18PQ96TA0 734 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 P2RY13Q9BPV8 354 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 XPO4Q9C0E2 1151 aaKnown RBP16.57■□□□□ 0.24
UPF3A-208ENST00000484246 TMEM51Q9NW97 253 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 RRN3Q9NYV6 651 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 SFMBT1Q9UHJ3 866 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 AGO1Q9UL18 857 aaKnown RBP16.57■□□□□ 0.24
UPF3A-208ENST00000484246 NDRG2Q9UN36 371 aaKnown RBP16.57■□□□□ 0.24
UPF3A-208ENST00000484246 NAALADL1Q9UQQ1 740 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 TLR6Q9Y2C9 796 aa16.57■□□□□ 0.24
UPF3A-208ENST00000484246 F5P12259 2224 aa16.56■□□□□ 0.24
UPF3A-208ENST00000484246 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms