RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 EML3Q32P44 896 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 STPG1Q5TH74 334 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 TAF3Q5VWG9 929 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 HGSNATQ68CP4 663 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 IL31Q6EBC2 164 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 TCEAL6Q6IPX3 200 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 IRF2BP2Q7Z5L9 587 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 SLC47A2Q86VL8 602 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 UNC93AQ86WB7 457 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 ZNF677Q86XU0 584 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 C12orf50Q8NA57 414 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-208ENST00000437607 RPLP0P6Q8NHW5 317 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 OSCP1Q8WVF1 389 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 KBTBD7Q8WVZ9 684 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 DDX1Q92499 740 aaKnown RBP12.78□□□□□ -0.36
PTPRF-208ENST00000437607 TCEAL3Q969E4 200 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 TNIP3Q96KP6 325 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 CHP1Q99653 195 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 P2RY13Q9BPV8 354 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 MRPL45Q9BRJ2 306 aaKnown RBP12.78□□□□□ -0.36
PTPRF-208ENST00000437607 PDCL3Q9H2J4 239 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 ABCB6Q9NP58 842 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 LUC7LQ9NQ29 371 aaKnown RBP12.78□□□□□ -0.36
PTPRF-208ENST00000437607 CEP83Q9Y592 693 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 PCDHGA5Q9Y5G8 931 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 WNT6Q9Y6F9 365 aa12.78□□□□□ -0.36
PTPRF-208ENST00000437607 NBEAQ8NFP9 2946 aa12.77□□□□□ -0.36
PTPRF-208ENST00000437607 DMXL2Q8TDJ6 3036 aa12.77□□□□□ -0.36
PTPRF-208ENST00000437607 C2orf78A6NCI8 922 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 GABRDO14764 452 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 MED7O43513 233 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 NDUFA10O95299 355 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 FAM163BP0C2L3 166 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 BRD2P25440 801 aaKnown RBP12.77□□□□□ -0.37
PTPRF-208ENST00000437607 PCSK1P29120 753 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 CLCN1P35523 988 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 MPLP40238 635 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 LHX1P48742 406 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 ZXDBP98169 803 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 ORC1Q13415 861 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 SPA17Q15506 151 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 CFAP221Q4G0U5 840 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 CC2D1AQ6P1N0 951 aaPredicted RBP12.77□□□□□ -0.37
PTPRF-208ENST00000437607 RAD9BQ6WBX8 426 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 SYT13Q7L8C5 426 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 ZNF571Q7Z3V5 609 aaPredicted RBP12.77□□□□□ -0.37
PTPRF-208ENST00000437607 LIMS2Q7Z4I7 341 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 NOP9Q86U38 636 aaKnown RBP12.77□□□□□ -0.37
PTPRF-208ENST00000437607 SLC20A1Q8WUM9 679 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 CD101Q93033 1021 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 TMEM176AQ96HP8 235 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 ELOVL4Q9GZR5 314 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 LINC00597Q9H2U6 94 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 TRPC7Q9HCX4 862 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 DUS2Q9NX74 493 aaKnown RBP12.77□□□□□ -0.37
PTPRF-208ENST00000437607 NOCTQ9UK39 431 aaKnown RBP12.77□□□□□ -0.37
PTPRF-208ENST00000437607 ZKSCAN5Q9Y2L8 839 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 IGF2RP11717 2491 aa12.77□□□□□ -0.37
PTPRF-208ENST00000437607 CCP110O43303 1012 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 ATP2C2O75185 946 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 USP17L7P0C7H9 530 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 TNFAIP3P21580 790 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 GNL1P36915 607 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-208ENST00000437607 RAD23BP54727 409 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 RPL10AP62906 217 aaKnown RBP12.76□□□□□ -0.37
PTPRF-208ENST00000437607 AMPD2Q01433 879 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 CDR2Q01850 454 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 DMC1Q14565 340 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 STILQ15468 1287 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 SLC18A3Q16572 532 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 GAB4Q2WGN9 574 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 FBXO43Q4G163 708 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 SGO2Q562F6 1265 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 FAM171BQ6P995 826 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 TRIM72Q6ZMU5 477 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 TXLNBQ8N3L3 684 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 CPA6Q8N4T0 437 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 ARL14EPQ8N8R7 260 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-208ENST00000437607 SLC4A11Q8NBS3 891 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 WHAMMQ8TF30 809 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 TWNKQ96RR1 684 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 AGPAT1Q99943 283 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 SYT15Q9BQS2 421 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 DESI2Q9BSY9 194 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 VPS45Q9NRW7 570 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 SPTLC3Q9NUV7 552 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 UXTQ9UBK9 157 aaPredicted RBP12.76□□□□□ -0.37
PTPRF-208ENST00000437607 EBF1Q9UH73 591 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 ANGPTL2Q9UKU9 493 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 PYCARDQ9ULZ3 195 aa12.76□□□□□ -0.37
PTPRF-208ENST00000437607 DSPP15924 2871 aaKnown RBP12.75□□□□□ -0.37
PTPRF-208ENST00000437607 TRAV19A0A0A6YYK7 116 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 EIF3CLB5ME19 914 aaKnown RBP12.75□□□□□ -0.37
PTPRF-208ENST00000437607 M0QYV0 167 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 ATP8B3O60423 1300 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 KCNK5O95279 499 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 CKMP06732 381 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 MMEP08473 750 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 CCDC175P0C221 793 aa12.75□□□□□ -0.37
PTPRF-208ENST00000437607 VDRP11473 427 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms