RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 BRI3BPQ8WY22 251 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 KHSRPQ92945 711 aaKnown RBP eCLIP13.87□□□□□ -0.194e-7■■□□□ 13.6
VPS54-203ENST00000409558 TMEM120AQ9BXJ8 343 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 TRIM55Q9BYV6 548 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 TXNDC16Q9P2K2 825 aa13.87□□□□□ -0.19
VPS54-203ENST00000409558 A0A1B0GUA9 196 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 KPNA7A9QM74 516 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 LCLAT1Q6UWP7 414 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 SUGP1Q8IWZ8 645 aaKnown RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 SIX6OS1Q8N1H7 587 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 APPL2Q8NEU8 664 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 NKX1-2Q9UD57 310 aaPredicted RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 MMP3P08254 477 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 SMIM10L2AP0DMW4 78 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 SMIM10L2BP0DMW5 78 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 HIC1Q14526 733 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 EFHC2Q5JST6 749 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 RWDD4Q6NW29 188 aaKnown RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 OLFML1Q6UWY5 402 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 ZNF354CQ86Y25 554 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 TBC1D10AQ9BXI6 508 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 ZMYND8Q9ULU4 1186 aaPredicted RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 PRRC2BQ5JSZ5 2229 aaKnown RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 SMIM28A0A1B0GU29 152 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 MEI4A8MW99 385 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 GHRP10912 638 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 NUDCD3Q8IVD9 361 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 KCTD15Q96SI1 283 aaPredicted RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 ARL8BQ9NVJ2 186 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 KLHL8Q9P2G9 620 aaPredicted RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 TYROBPO43914 113 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 MOCS2O96007 188 aaPredicted RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 PEX6Q13608 980 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 UNC5AQ6ZN44 842 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 POU5F2Q8N7G0 328 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 CLPTM1LQ96KA5 538 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 TINF2Q9BSI4 451 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 ATXN3LQ9H3M9 355 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 USP29Q9HBJ7 922 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 GBA2Q9HCG7 927 aaPredicted RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 CPSF2Q9P2I0 782 aaKnown RBP13.86□□□□□ -0.19
VPS54-203ENST00000409558 GGA2Q9UJY4 613 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 ITGA11Q9UKX5 1188 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 FIS1Q9Y3D6 152 aa13.86□□□□□ -0.19
VPS54-203ENST00000409558 SRRM3A6NNA2 597 aaPredicted RBP13.85□□□□□ -0.19
VPS54-203ENST00000409558 PSMB4P28070 264 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 CDH5P33151 784 aaPredicted RBP13.85□□□□□ -0.19
VPS54-203ENST00000409558 SERPINB4P48594 390 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 ATXN3P54252 364 aaPredicted RBP13.85□□□□□ -0.19
VPS54-203ENST00000409558 CMC1Q7Z7K0 106 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 EXOC8Q8IYI6 725 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 ARRDC4Q8NCT1 418 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 DENND1AQ8TEH3 1009 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 NUDCD1Q96RS6 583 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 GAD1Q99259 594 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 PAAF1Q9BRP4 392 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 SYT17Q9BSW7 474 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 SPON1Q9HCB6 807 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 PAK5Q9P286 719 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 MFSD11O43934 449 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 UNC5CO95185 931 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 CELF2O95319 508 aaKnown RBP13.85□□□□□ -0.19
VPS54-203ENST00000409558 POMCP01189 267 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 USP17L7P0C7H9 530 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 STIP1P31948 543 aaKnown RBP13.85□□□□□ -0.19
VPS54-203ENST00000409558 SLC26A2P50443 739 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 BOLA3Q53S33 107 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 PPP1R2P3Q6NXS1 205 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 SLC27A1Q6PCB7 646 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 CYP4V2Q6ZWL3 525 aaPredicted RBP13.85□□□□□ -0.19
VPS54-203ENST00000409558 ADGRF2Q8IZF7 708 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 TNS4Q8IZW8 715 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 NIPA2Q8N8Q9 360 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 COLGALT1Q8NBJ5 622 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 WDR81Q562E7 1941 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 HTTP42858 3142 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 LOC100653049A0A140TA62 436 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 H3BRJ5 948 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 KRT34O76011 436 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 HAUS5O94927 633 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 NCAM1P13591 858 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 C9orf57Q5W0N0 161 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 NOTUMQ6P988 496 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 ISLR2Q6UXK2 745 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 CAND1Q86VP6 1230 aaKnown RBP13.85□□□□□ -0.19
VPS54-203ENST00000409558 PPTC7Q8NI37 304 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 MICAL1Q8TDZ2 1067 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 CCDC124Q96CT7 223 aaKnown RBP13.85□□□□□ -0.19
VPS54-203ENST00000409558 CCDC134Q9H6E4 229 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 CYP4F11Q9HBI6 524 aa13.85□□□□□ -0.19
VPS54-203ENST00000409558 NUP205Q92621 2012 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 MGRN1O60291 552 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 KRT37O76014 449 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 PGK1P00558 417 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 ABHD2P08910 425 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 SLC24A2Q9UI40 661 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 PSAT1Q9Y617 370 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 GYG2O15488 501 aa13.84□□□□□ -0.19
VPS54-203ENST00000409558 ESRRAP11474 423 aaPredicted RBP13.84□□□□□ -0.19
VPS54-203ENST00000409558 MOGSQ13724 837 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms