RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 HUS1O60921 280 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 FAM155BO75949 473 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 MAGEA3P43357 314 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 LILRA4P59901 499 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 FKBP1BP68106 108 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 RIPK1Q13546 671 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 SETDB1Q15047 1291 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 SV2CQ496J9 727 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 EFHC1Q5JVL4 640 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 OSTM1Q86WC4 334 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 ADGRF2Q8IZF7 708 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 VPS52Q8N1B4 723 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 PYROXD2Q8N2H3 581 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 KIF2BQ8N4N8 673 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 SMG8Q8ND04 991 aaKnown RBP21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 QKIQ96PU8 341 aaKnown RBP eCLIP21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 LRRC37BQ96QE4 947 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 CPA4Q9UI42 421 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 IPPQ9Y573 584 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 USP3Q9Y6I4 520 aa21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 TOMM70O94826 608 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 UNC5CO95185 931 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 DHRS4L1P0CG22 281 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 PYGBP11216 843 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 AMPD1P23109 780 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 PRKCHP24723 683 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 MATKP42679 507 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 NCBP2-AS2Q69YL0 99 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 ZNF534Q76KX8 674 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 PIGZQ86VD9 579 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 LRRC6Q86X45 466 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 PPM1NQ8N819 430 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 NDRG1Q92597 394 aaKnown RBP21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 LRRC39Q96DD0 335 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 APOPT1Q96IL0 206 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 TNIP3Q96KP6 325 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 DTLQ9NZJ0 730 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 MFHAS1Q9Y4C4 1052 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 XPO1O14980 1071 aaKnown RBP21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 GOT1P17174 413 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 ALDH3A1P30838 453 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 ETV4P43268 484 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 MAP2K5Q13163 448 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 TTC39BQ5VTQ0 682 aaPredicted RBP21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 CTAGE3PQ8IX95 158 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 DEFB106AQ8N104 65 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 B3GALNT2Q8NCR0 500 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 ERP27Q96DN0 273 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 DNAI2Q9GZS0 605 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 MANSC1Q9H8J5 431 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 NOD2Q9HC29 1040 aa21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 TRIP12Q14669 1992 aaPredicted RBP21.57■■□□□ 1.04
CCDC88B-203ENST00000359902 KRT16P08779 473 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 WARSP23381 471 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 CRYBB1P53674 252 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 IRF5Q13568 498 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 SLC25A52Q3SY17 297 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 FAM131BQ86XD5 332 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 PTPRN2Q92932 1015 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 SIGLEC10Q96LC7 697 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 HNRNPABQ99729 332 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 ALG13Q9NP73 1137 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 BAIAP2L1Q9UHR4 511 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 ZNF180Q9UJW8 692 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 FZD10Q9ULW2 581 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 DCTN3O75935 186 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 MYL3P08590 195 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 TPSB2P20231 275 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 GTF2A1P52655 376 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 TPSAB1Q15661 275 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 UNC5AQ6ZN44 842 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 DUSP16Q9BY84 665 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 SMYD2Q9NRG4 433 aa21.56■■□□□ 1.04
CCDC88B-203ENST00000359902 ZNF236Q9UL36 1845 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 DOCK3Q8IZD9 2030 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 TRIM49D1C9J1S8 452 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 DGKIO75912 1065 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 APOEP02649 317 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 BEX3Q00994 111 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 ADIGQ0VDE8 80 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 TOP6BLQ8N6T0 577 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 YY1AP1Q9H869 796 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 NPHS2Q9NP85 383 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 CLDN5O00501 218 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 GSTA2P09210 222 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 SULT1E1P49888 294 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 PLEKHG4Q58EX7 1191 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 HEATR6Q6AI08 1181 aaKnown RBP21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 MPP5Q8N3R9 675 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 OLFM3Q96PB7 478 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 FAM111AQ96PZ2 611 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 EBNA1BP2Q99848 306 aaKnown RBP21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 TXLNGQ9NUQ3 528 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 NR2E3Q9Y5X4 410 aa21.55■■□□□ 1.04
CCDC88B-203ENST00000359902 BEST1O76090 585 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 SNRPAP09012 282 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 GRIA1P42261 906 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 CPT1AP50416 773 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 SEMA5AQ13591 1074 aa21.54■■□□□ 1.04
CCDC88B-203ENST00000359902 FYB2Q5VWT5 728 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms