RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 GFOD2Q3B7J2 385 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 GPAT3Q53EU6 434 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 CASP12Q6UXS9 341 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 SAMD7Q7Z3H4 446 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 TFB1MQ8WVM0 346 aaKnown RBP10.03□□□□□ -0.8
CHD3-202ENST00000358181 KLF6Q99612 283 aaPredicted RBP10.03□□□□□ -0.8
CHD3-202ENST00000358181 C6orf62Q9GZU0 229 aaPredicted RBP10.03□□□□□ -0.8
CHD3-202ENST00000358181 UBE2Q2LH0YL09 131 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 TRIM24O15164 1050 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 PTPN3P26045 913 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 POU5F1Q01860 360 aaKnown RBP10.03□□□□□ -0.8
CHD3-202ENST00000358181 NECTIN1Q15223 517 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 CCDC137Q6PK04 289 aaKnown RBP10.03□□□□□ -0.8
CHD3-202ENST00000358181 PRPF39Q86UA1 669 aaKnown RBP10.03□□□□□ -0.8
CHD3-202ENST00000358181 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.03□□□□□ -0.8
CHD3-202ENST00000358181 SMYD1Q8NB12 490 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 GGA3Q9NZ52 723 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 MYO3BQ8WXR4 1341 aa10.03□□□□□ -0.8
CHD3-202ENST00000358181 ERCC6L2Q5T890 1561 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 SUPT7LO94864 414 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 ZNF806P0C7X5 589 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 FAM200BP0CF97 657 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 UQCRBP14927 111 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 PLA2G4EQ3MJ16 856 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 RABL6Q3YEC7 729 aaPredicted RBP10.02□□□□□ -0.8
CHD3-202ENST00000358181 SAPCD2Q86UD0 394 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 LPCAT1Q8NF37 534 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 GPRC5AQ8NFJ5 357 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 RSPH1Q8WYR4 309 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 FIG4Q92562 907 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 THAP9Q9H5L6 903 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 ETNK1Q9HBU6 452 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 TBC1D23Q9NUY8 699 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 CPA4Q9UI42 421 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 DMTF1Q9Y222 760 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 SYNMO15061 1565 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 FAM205CA6NFA0 338 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 OTOL1A6NHN0 477 aaPredicted RBP10.02□□□□□ -0.8
CHD3-202ENST00000358181 ZNF432O94892 652 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 SLC2A4P14672 509 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 CPA2P48052 419 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 COASYQ13057 564 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 GNA13Q14344 377 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 NDUFA5Q16718 116 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 KBTBD12Q3ZCT8 623 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 SETMARQ53H47 684 aaPredicted RBP10.02□□□□□ -0.8
CHD3-202ENST00000358181 RBM43Q6ZSC3 357 aaKnown RBP10.02□□□□□ -0.8
CHD3-202ENST00000358181 RASGEF1AQ8N9B8 481 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 C18orf8Q96DM3 657 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 TBC1D10AQ9BXI6 508 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 NR2E3Q9Y5X4 410 aa10.02□□□□□ -0.8
CHD3-202ENST00000358181 CENPXA8MT69 81 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 WWP2O00308 870 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 POMCP01189 267 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 IFNAR1P17181 557 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 CBWD3Q5JTY5 395 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 CBWD5Q5RIA9 395 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 CXorf40AQ8TE69 158 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 EIF2AK1Q9BQI3 630 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 TMA7Q9Y2S6 64 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 UTYO14607 1347 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 M0QYT0 321 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 ITPKBP27987 946 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 GDI2P50395 445 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 FOXO4P98177 505 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 GRSF1Q12849 480 aaKnown RBP eCLIP10.02□□□□□ -0.81
CHD3-202ENST00000358181 PKN2Q16513 984 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 UAP1L1Q3KQV9 507 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 TTC33Q6PID6 262 aaPredicted RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 TRAPPC5Q8IUR0 188 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 SEC16BQ96JE7 1060 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 FAM84BQ96KN1 310 aaPredicted RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 L1RE1Q9UN81 338 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 HYKKA2RU49 373 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 EXTL3O43909 919 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 PSIP1O75475 530 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 GIMD1P0DJR0 217 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 IGFALSP35858 605 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 MROH9Q5TGP6 573 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 IQSEC1Q6DN90 963 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 AMIGO1Q86WK6 493 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 ZNF563Q8TA94 476 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 RERGQ96A58 199 aaPredicted RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 ERP27Q96DN0 273 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 ZNF333Q96JL9 665 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 INTS7Q9NVH2 962 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 RHBDL2Q9NX52 303 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 COMMD9Q9P000 198 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.02□□□□□ -0.81
CHD3-202ENST00000358181 NDRG2Q9UN36 371 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 P4HBP07237 508 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 CETPP11597 493 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 TAL1P17542 331 aaPredicted RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 GARTP22102 1010 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 HSPA9P38646 679 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 MASP1P48740 699 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 AP1S1P61966 158 aa10.02□□□□□ -0.81
CHD3-202ENST00000358181 ETF1P62495 437 aaKnown RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 PREPLQ4J6C6 727 aaPredicted RBP10.02□□□□□ -0.81
CHD3-202ENST00000358181 P4HA3Q7Z4N8 544 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms