RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 MDH1BQ5I0G3 518 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 SYPL2Q5VXT5 272 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 FAM228AQ86W67 206 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 TTC39CQ8N584 583 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 LRRC52Q8N7C0 313 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 FAXDC2Q96IV6 333 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 PRKAG3Q9UGI9 489 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 GNEQ9Y223 722 aaKnown RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 SMIM35A0A1B0GVV1 85 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 E2F8A0AVK6 867 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 MYADML2A6NDP7 307 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 STAU1O95793 577 aaKnown RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 GTF2A1P52655 376 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 HUNKP57058 714 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 SESN2P58004 480 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 TAF1CQ15572 869 aaPredicted RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 UBXN11Q5T124 520 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 MROH9Q5TGP6 573 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 HEATR6Q6AI08 1181 aaKnown RBP10.72□□□□□ -0.69
LIMA1-201ENST00000341247 ALKAL1Q6UXT8 129 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 VPS52Q8N1B4 723 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 B3GALNT2Q8NCR0 500 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 MECRQ9BV79 373 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 RHOBTB2Q9BYZ6 727 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 AP5M1Q9H0R1 490 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 RRAGCQ9HB90 399 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 SMYD2Q9NRG4 433 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 MTMR10Q9NXD2 777 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 SENP1Q9P0U3 644 aa10.72□□□□□ -0.69
LIMA1-201ENST00000341247 M0QYT0 321 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 CBX6O95503 412 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 KRT16P08779 473 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 BGNP21810 368 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 TGM2P21980 687 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 MLH1P40692 756 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 IFRD2Q12894 506 aaPredicted RBP10.71□□□□□ -0.69
LIMA1-201ENST00000341247 SLC9A4Q6AI14 798 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 CES3Q6UWW8 571 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 CDHR3Q6ZTQ4 885 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 SMG8Q8ND04 991 aaKnown RBP10.71□□□□□ -0.69
LIMA1-201ENST00000341247 HASPINQ8TF76 798 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 KCNK16Q96T55 309 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 GAD1Q99259 594 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 LRRC4Q9HBW1 653 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 RXFP1Q9HBX9 757 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 HAO1Q9UJM8 370 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 CHKBQ9Y259 395 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 ZNF638Q14966 1978 aaKnown RBP10.71□□□□□ -0.69
LIMA1-201ENST00000341247 IQANK1A0A1B0GTG1 560 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 DPYSL4O14531 572 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 NDC80O14777 642 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 CHADO15335 359 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 EDF1O60869 148 aaKnown RBP10.71□□□□□ -0.69
LIMA1-201ENST00000341247 CD4P01730 458 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 BNIP1Q12981 228 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 MAP2K5Q13163 448 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 SLC26A9Q7LBE3 791 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 UNC93AQ86WB7 457 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 RFWD2Q8NHY2 731 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 ZNF560Q96MR9 790 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 ZNF670Q9BS34 389 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 IQCGQ9H095 443 aaKnown RBP10.71□□□□□ -0.69
LIMA1-201ENST00000341247 DTLQ9NZJ0 730 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 L3MBTL1Q9Y468 752 aa10.71□□□□□ -0.69
LIMA1-201ENST00000341247 CASTOR2A6NHX0 329 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 SLC15A5A6NIM6 579 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 MFSD11O43934 449 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 ZNF865P0CJ78 1059 aaPredicted RBP10.71□□□□□ -0.7
LIMA1-201ENST00000341247 VAV1P15498 845 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 NQO1P15559 274 aaKnown RBP10.71□□□□□ -0.7
LIMA1-201ENST00000341247 ARL4AP40617 200 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 SETDB1Q15047 1291 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 SIX6OS1Q8N1H7 587 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 BANPQ8N9N5 519 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 MZB1Q8WU39 189 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 DEPDC1BQ8WUY9 529 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 AGAP3Q96P47 875 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 LRRC37BQ96QE4 947 aa10.71□□□□□ -0.7
LIMA1-201ENST00000341247 C17orf102A2RUQ5 167 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 KCNK1O00180 336 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 CAPN9O14815 690 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 MDM4O15151 490 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 SETSIPP0DME0 302 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 HOXD8P13378 290 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-201ENST00000341247 KIAA0319Q5VV43 1072 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 ARHGAP17Q68EM7 881 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 NCBP2-AS2Q69YL0 99 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 CXCL17Q6UXB2 119 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 UNC5AQ6ZN44 842 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 PDCD7Q8N8D1 485 aaKnown RBP10.7□□□□□ -0.7
LIMA1-201ENST00000341247 TEKT4Q8WW24 435 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 SLC44A1Q8WWI5 657 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 PAAF1Q9BRP4 392 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 MANSC1Q9H8J5 431 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 ZNF395Q9H8N7 513 aaPredicted RBP10.7□□□□□ -0.7
LIMA1-201ENST00000341247 POPDC2Q9HBU9 364 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 KRT82Q9NSB4 513 aa10.7□□□□□ -0.7
LIMA1-201ENST00000341247 TTLL3Q9Y4R7 772 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms