RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 C2CD4DB7Z1M9 353 aa23.12■■□□□ 1.29
SDC3-202ENST00000339394 MSI1O43347 362 aaKnown RBP23.12■■□□□ 1.29
SDC3-202ENST00000339394 IGLV3-25P01717 112 aa23.12■■□□□ 1.29
SDC3-202ENST00000339394 ZNF143P52747 638 aaPredicted RBP23.12■■□□□ 1.29
SDC3-202ENST00000339394 OGDHQ02218 1023 aa23.12■■□□□ 1.29
SDC3-202ENST00000339394 RHOT2Q8IXI1 618 aa23.12■■□□□ 1.29
SDC3-202ENST00000339394 ST13P5Q8NFI4 369 aaPredicted RBP23.12■■□□□ 1.29
SDC3-202ENST00000339394 ZNF564Q8TBZ8 553 aaPredicted RBP23.12■■□□□ 1.29
SDC3-202ENST00000339394 RFFLQ8WZ73 363 aa23.12■■□□□ 1.29
SDC3-202ENST00000339394 KLF16Q9BXK1 252 aaPredicted RBP23.12■■□□□ 1.29
SDC3-202ENST00000339394 CALCOCO1Q9P1Z2 691 aa23.12■■□□□ 1.29
SDC3-202ENST00000339394 ANAPC7Q9UJX3 599 aa23.12■■□□□ 1.29
SDC3-202ENST00000339394 NR2E1Q9Y466 385 aa23.12■■□□□ 1.29
SDC3-202ENST00000339394 MYO16Q9Y6X6 1858 aa23.12■■□□□ 1.29
SDC3-202ENST00000339394 A0A0U1RQJ8 604 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 SLC12A8A0AV02 714 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 M0QYT0 321 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 PTPN9P43378 593 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 SULT1E1P49888 294 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 COG7P83436 770 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 ATP11AP98196 1134 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 EIF4EBP2Q13542 120 aaPredicted RBP23.11■■□□□ 1.29
SDC3-202ENST00000339394 C15orf59Q2T9L4 293 aaPredicted RBP23.11■■□□□ 1.29
SDC3-202ENST00000339394 OTUD1Q5VV17 481 aaPredicted RBP23.11■■□□□ 1.29
SDC3-202ENST00000339394 TDRD5Q8NAT2 981 aaKnown RBP23.11■■□□□ 1.29
SDC3-202ENST00000339394 FNIP1Q8TF40 1166 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 ATXN2LQ8WWM7 1075 aaKnown RBP23.11■■□□□ 1.29
SDC3-202ENST00000339394 ATRIPQ8WXE1 791 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 SERPINB11Q96P15 392 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 TBCBQ99426 244 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 TRPV4Q9HBA0 871 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 DDIT4Q9NX09 232 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 DUSP10Q9Y6W6 482 aa23.11■■□□□ 1.29
SDC3-202ENST00000339394 SYNJ2BP-COX16A0A087WUM0 186 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 PJA2O43164 708 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 CCDC175P0C221 793 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 VIPR2P41587 438 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 NME3Q13232 169 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 TCEAL1Q15170 157 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 SH3PXD2AQ5TCZ1 1133 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 BNIPLQ7Z465 357 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 PGAP3Q96FM1 320 aaPredicted RBP23.1■■□□□ 1.29
SDC3-202ENST00000339394 BTBD6Q96KE9 485 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 CNPY3Q9BT09 278 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 FAM204AQ9H8W3 233 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 COX16Q9P0S2 106 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 MYO1FO00160 1098 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 DPYSL4O14531 572 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 IRAK2O43187 625 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 FCARP24071 287 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 PSMA2P25787 234 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 ZNF252P-AS1Q0IIN9 211 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 KIF5AQ12840 1032 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 NNTQ13423 1086 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 CDO1Q16878 200 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 TANGO2Q6ICL3 276 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 PARM1Q6UWI2 310 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 TXLNBQ8N3L3 684 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 CELF5Q8N6W0 485 aaKnown RBP23.1■■□□□ 1.29
SDC3-202ENST00000339394 TTC16Q8NEE8 873 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 ADAMTS19Q8TE59 1207 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 SH3RF2Q8TEC5 729 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 CENPIQ92674 756 aaPredicted RBP23.1■■□□□ 1.29
SDC3-202ENST00000339394 FGF14Q92915 247 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 ZFP14Q9HCL3 533 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 SALL4Q9UJQ4 1053 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 TLR6Q9Y2C9 796 aa23.1■■□□□ 1.29
SDC3-202ENST00000339394 HBS1LQ9Y450 684 aaKnown RBP23.1■■□□□ 1.29
SDC3-202ENST00000339394 A0A0A6YYK5 440 aaPredicted RBP23.09■■□□□ 1.29
SDC3-202ENST00000339394 LEFTY2O00292 366 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 MTA2O94776 668 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 ENDOD1O94919 500 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 HMBSP08397 361 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 GBP1P32455 592 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 KPNA1P52294 538 aaPredicted RBP23.09■■□□□ 1.29
SDC3-202ENST00000339394 ATXN1P54253 815 aaKnown RBP23.09■■□□□ 1.29
SDC3-202ENST00000339394 TRIP4Q15650 581 aaPredicted RBP23.09■■□□□ 1.29
SDC3-202ENST00000339394 RIN3Q8TB24 985 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 FAM172AQ8WUF8 416 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 RSPRY1Q96DX4 576 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 LRRC3BQ96PB8 259 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 PIGVQ9NUD9 493 aa23.09■■□□□ 1.29
SDC3-202ENST00000339394 BTNL10A8MVZ5 291 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 CCP110O43303 1012 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 NOP2P46087 812 aaKnown RBP23.08■■□□□ 1.29
SDC3-202ENST00000339394 TBX4P57082 545 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 DEUP1Q05D60 604 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 RAB6CQ53S08 254 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 STRADAQ7RTN6 431 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 PLCD3Q8N3E9 789 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 WBP2Q969T9 261 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 SLC39A13Q96H72 371 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 RAB6CQ9H0N0 254 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 KIF9Q9HAQ2 790 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 CFAP97Q9P2B7 532 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 PPP2R2CQ9Y2T4 447 aa23.08■■□□□ 1.29
SDC3-202ENST00000339394 ANAPC1Q9H1A4 1944 aa23.08■■□□□ 1.28
SDC3-202ENST00000339394 OBSL1O75147 1896 aa23.08■■□□□ 1.28
SDC3-202ENST00000339394 STC2O76061 302 aa23.07■■□□□ 1.28
SDC3-202ENST00000339394 F9P00740 461 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms