RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 PDE5AO76074 875 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 VTNP04004 478 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 UBA1P22314 1058 aaKnown RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 MGAT1P26572 445 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 INPP5AQ14642 412 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 CNBD2Q96M20 576 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 SPATA31C2B4DYI2 1134 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 DCXO43602 365 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 TRIM13O60858 407 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 FAM200BP0CF97 657 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 GLRBP48167 497 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 POU5F1Q01860 360 aaKnown RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 BTKQ06187 659 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 PTPN20Q4JDL3 420 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 DRICH1Q6PGQ1 229 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 ADGRD1Q6QNK2 874 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 KYQ8NBH2 561 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 GIPC2Q8TF65 315 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.18■□□□□ 0.023e-9■■■■■ 78.5
TCOF1-201ENST00000323668 CEP41Q9BYV8 373 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 DENND2DQ9H6A0 471 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 SPDYE16A6NNV3 312 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 BST2Q10589 180 aaKnown RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 CCDC153Q494R4 210 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 NET1Q7Z628 596 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 ZDHHC17Q8IUH5 632 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 FBXO16Q8IX29 292 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-201ENST00000323668 SP110Q9HB58 689 aa15.18■□□□□ 0.02
TCOF1-201ENST00000323668 SLCO1B7G3V0H7 640 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 ZNF862O60290 1169 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 CLPTM1O96005 669 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 GFAPP14136 432 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 NOVP48745 357 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 TMEM259Q4ZIN3 620 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 TCHHL1Q5QJ38 904 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 C4orf50Q6ZRC1 276 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 TDRD5Q8NAT2 981 aaKnown RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 SLC44A1Q8WWI5 657 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 GFM2Q969S9 779 aaKnown RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 MYPNQ86TC9 1320 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 ZNF142P52746 1687 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 AVILO75366 819 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 CST3P01034 146 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 INSRRP14616 1297 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 GSCP56915 257 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 LAYNQ6UX15 382 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 CALML6Q8TD86 181 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 GDPD5Q8WTR4 605 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 ACO2Q99798 780 aaKnown RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 FAM192AQ9GZU8 254 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 SPATC1LQ9H0A9 340 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 IARS2Q9NSE4 1012 aaKnown RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 WARS2Q9UGM6 360 aaKnown RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 RUVBL2Q9Y230 463 aaKnown RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 MYH7P12883 1935 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 LIN7AO14910 233 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 SNX2O60749 519 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 LRCH4O75427 683 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 PGAM1P18669 254 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 EEF1DP29692 281 aaKnown RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 ABHD15Q6UXT9 468 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 MRPL46Q9H2W6 279 aaKnown RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 VANGL2Q9ULK5 521 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 ACOT9Q9Y305 439 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 UMODL1Q5DID0 1318 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 SEC24DO94855 1032 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-201ENST00000323668 FAM83EQ2M2I3 478 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 ARCQ7LC44 396 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 SIAH1Q8IUQ4 282 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 PYDC1Q8WXC3 89 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 NMRK1Q9NWW6 199 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 C2CD2Q9Y426 696 aa15.17■□□□□ 0.02
TCOF1-201ENST00000323668 CDK7P50613 346 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 ARPP19P56211 112 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 NSUN2Q08J23 767 aaKnown RBP eCLIP15.16■□□□□ 0.02
TCOF1-201ENST00000323668 GRTP1Q5TC63 336 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 ZBTB18Q99592 522 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 C12orf65Q9H3J6 166 aaKnown RBP15.16■□□□□ 0.02
TCOF1-201ENST00000323668 SSU72Q9NP77 194 aaKnown RBP15.16■□□□□ 0.02
TCOF1-201ENST00000323668 A0A096LPK6 155 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 RNF103O00237 685 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 DYNC1LI2O43237 492 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-201ENST00000323668 MAFO75444 373 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-201ENST00000323668 CYP2C9P11712 490 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 SLC25A3Q00325 362 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 IYDQ6PHW0 289 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 RIPOR1Q6ZS17 1223 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 ALYREFQ86V81 257 aaKnown RBP15.16■□□□□ 0.02
TCOF1-201ENST00000323668 REPS2Q8NFH8 660 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 LMO3Q8TAP4 145 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 DDI1Q8WTU0 396 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 SKA2Q8WVK7 121 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-201ENST00000323668 EBNA1BP2Q99848 306 aaKnown RBP15.16■□□□□ 0.02
TCOF1-201ENST00000323668 NMUR2Q9GZQ4 415 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 CAAP1Q9H8G2 361 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 KLK14Q9P0G3 267 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 SNCAIPQ9Y6H5 919 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 ANXA9O76027 345 aa15.16■□□□□ 0.02
TCOF1-201ENST00000323668 SRP72O76094 671 aaKnown RBP15.16■□□□□ 0.02
TCOF1-201ENST00000323668 CES3Q6UWW8 571 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms