RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CDC25BP30305 580 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 FLT3P36888 993 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 IFNAR2P48551 515 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 COG7P83436 770 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 ASTE1Q2TB18 679 aaPredicted RBP13.31□□□□□ -0.28
SS18-202ENST00000269138 HTR3DQ70Z44 454 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 BBS7Q8IWZ6 715 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 EMC1Q8N766 993 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 JOSD2Q8TAC2 188 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 OSCP1Q8WVF1 389 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 IRF7Q92985 503 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 TRIM62Q9BVG3 475 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 GRPEL1Q9HAV7 217 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.31□□□□□ -0.28
SS18-202ENST00000269138 GTSE1Q9NYZ3 720 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 CA14Q9ULX7 337 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 NENFQ9UMX5 172 aa13.31□□□□□ -0.28
SS18-202ENST00000269138 HBS1LQ9Y450 684 aaKnown RBP13.31□□□□□ -0.28
SS18-202ENST00000269138 GOLGA6L3A6NEY3 463 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 TRUB2O95900 331 aaKnown RBP13.3□□□□□ -0.28
SS18-202ENST00000269138 IGLV3-25P01717 112 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 ALADP13716 330 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 CORO1AP31146 461 aaKnown RBP13.3□□□□□ -0.28
SS18-202ENST00000269138 MATKP42679 507 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 SOX9P48436 509 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 GSCP56915 257 aaPredicted RBP13.3□□□□□ -0.28
SS18-202ENST00000269138 CDK17Q00537 523 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 GFPT1Q06210 699 aaPredicted RBP13.3□□□□□ -0.28
SS18-202ENST00000269138 MAPK8IP2Q13387 824 aaPredicted RBP13.3□□□□□ -0.28
SS18-202ENST00000269138 PDGFRLQ15198 375 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 TRIP4Q15650 581 aaPredicted RBP13.3□□□□□ -0.28
SS18-202ENST00000269138 EML3Q32P44 896 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 SLC44A4Q53GD3 710 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 OTUD1Q5VV17 481 aaPredicted RBP13.3□□□□□ -0.28
SS18-202ENST00000269138 Q6ZNB5 142 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 VPS36Q86VN1 386 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 ISCUQ9H1K1 167 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 NHEJ1Q9H9Q4 299 aaPredicted RBP13.3□□□□□ -0.28
SS18-202ENST00000269138 HEBP1Q9NRV9 189 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 CALCOCO1Q9P1Z2 691 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 WDR35Q9P2L0 1181 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 FBXL21Q9UKT6 434 aa13.3□□□□□ -0.28
SS18-202ENST00000269138 HELZP42694 1942 aaKnown RBP13.3□□□□□ -0.28
SS18-202ENST00000269138 SYNJ2BP-COX16A0A087WUM0 186 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 SSU72P8A0A1W2PR75 194 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 KRBA1A5PL33 1030 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 IGLV3-27P01718 113 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 NOS2P35228 1153 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 RFC1P35251 1148 aaPredicted RBP13.29□□□□□ -0.28
SS18-202ENST00000269138 TBX4P57082 545 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 PFKPQ01813 784 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 RUNX3Q13761 415 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 RAB6CQ53S08 254 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 ZC3H12AQ5D1E8 599 aaKnown RBP13.29□□□□□ -0.28
SS18-202ENST00000269138 CCDC122Q5T0U0 273 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 DNAJC24Q6P3W2 148 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 ALKBH5Q6P6C2 394 aaKnown RBP13.29□□□□□ -0.28
SS18-202ENST00000269138 TRIM67Q6ZTA4 783 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 DENND1CQ8IV53 801 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 ADGRG2Q8IZP9 1017 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 C3orf20Q8ND61 904 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 PLD4Q96BZ4 506 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 SLC39A13Q96H72 371 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 VCPIP1Q96JH7 1222 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 FCRL2Q96LA5 508 aaPredicted RBP13.29□□□□□ -0.28
SS18-202ENST00000269138 NPY6RQ99463 290 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 DDX23Q9BUQ8 820 aaKnown RBP13.29□□□□□ -0.28
SS18-202ENST00000269138 RAB6CQ9H0N0 254 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 FAM204AQ9H8W3 233 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 TRPV5Q9NQA5 729 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 COX16Q9P0S2 106 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 WNT16Q9UBV4 365 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 LSM7Q9UK45 103 aaKnown RBP13.29□□□□□ -0.28
SS18-202ENST00000269138 AGO1Q9UL18 857 aaKnown RBP13.29□□□□□ -0.28
SS18-202ENST00000269138 COL4A3Q01955 1670 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 SHISA7A6NL88 538 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 SIGLEC16A6NMB1 481 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 M0QYT0 321 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 DLL1O00548 723 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 IRAK2O43187 625 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 KRT3P12035 628 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 ABCB4P21439 1286 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 SULT1E1P49888 294 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 RPL7AP62424 266 aaKnown RBP13.29□□□□□ -0.28
SS18-202ENST00000269138 SIGLEC14Q08ET2 396 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 NME3Q13232 169 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 MAMLD1Q13495 774 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 EIF4EBP2Q13542 120 aaPredicted RBP13.29□□□□□ -0.28
SS18-202ENST00000269138 ITPRIPL2Q3MIP1 535 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 PPP1R15BQ5SWA1 713 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 PPP1R2P3Q6NXS1 205 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 RHBDF2Q6PJF5 856 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 SIX5Q8N196 739 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 CSGALNACT1Q8TDX6 532 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 RXFP2Q8WXD0 754 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 DNASE1L2Q92874 299 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 NT5C3BQ969T7 300 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 ZNF653Q96CK0 615 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 P2RY11Q96G91 374 aa13.29□□□□□ -0.28
SS18-202ENST00000269138 CFAP57Q96MR6 1250 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms