RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 NME3Q13232 169 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 LEXMQ3ZCV2 418 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 SH3PXD2AQ5TCZ1 1133 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 KLHDC10Q6PID8 442 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 TTC16Q8NEE8 873 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 MYADMQ96S97 322 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 CNPY3Q9BT09 278 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 DDIT4Q9NX09 232 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 TRMT1Q9NXH9 659 aaKnown RBP28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 CALCOCO1Q9P1Z2 691 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 CDH7Q9ULB5 785 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 BTNL10A8MVZ5 291 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 MYO1FO00160 1098 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 KRT86O43790 486 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 MTA2O94776 668 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 PTPN9P43378 593 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 TCEAL1Q15170 157 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 ARHGAP29Q52LW3 1261 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 DENND4AQ7Z401 1863 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 GADD45GIP1Q8TAE8 222 aaPredicted RBP28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 ZSCAN18Q8TBC5 510 aaPredicted RBP28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 FNIP1Q8TF40 1166 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 NT5C3BQ969T7 300 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 C5orf42Q9H799 3197 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 RRN3Q9NYV6 651 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 GUCA1BQ9UMX6 200 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 PAXBP1Q9Y5B6 917 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 CPQQ9Y646 472 aa28.41■■■□□ 2.14
CHMP4B-201ENST00000217402 SLC12A8A0AV02 714 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 ZSCAN12O43309 604 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 HMBSP08397 361 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 PFKLP17858 780 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 RAB6CQ53S08 254 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 FAM172AQ8WUF8 416 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 SERPINB11Q96P15 392 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 RAB6CQ9H0N0 254 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP28.4■■■□□ 2.141e-7■■■□□ 19.1
CHMP4B-201ENST00000217402 IP6K2Q9UHH9 426 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 ZMYM5Q9UJ78 669 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 ATXN1P54253 815 aaKnown RBP28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 MESDQ14696 234 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 HS1BP3Q53T59 392 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 GDE1Q9NZC3 331 aa28.4■■■□□ 2.14
CHMP4B-201ENST00000217402 SOBPA7XYQ1 873 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 IRAK2O43187 625 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 PRAMEF12O95522 483 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 IGLV3-25P01717 112 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 IRF1P10914 325 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 DESP17661 470 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 SLC7A9P82251 487 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 DEUP1Q05D60 604 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 DAB2IPQ5VWQ8 1189 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 PTCRAQ6ISU1 281 aaPredicted RBP28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 ST13P5Q8NFI4 369 aaPredicted RBP28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 GKN1Q9NS71 199 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 PIGVQ9NUD9 493 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 CCL26Q9Y258 94 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 USTQ9Y2C2 406 aa28.39■■■□□ 2.13
CHMP4B-201ENST00000217402 USP27XA6NNY8 438 aa28.38■■■□□ 2.13
CHMP4B-201ENST00000217402 MOCS3O95396 460 aa28.38■■■□□ 2.13
CHMP4B-201ENST00000217402 GBP1P32455 592 aa28.38■■■□□ 2.13
CHMP4B-201ENST00000217402 HADHBP55084 474 aaKnown RBP28.38■■■□□ 2.13
CHMP4B-201ENST00000217402 FAM78AQ5JUQ0 283 aa28.38■■■□□ 2.13
CHMP4B-201ENST00000217402 ARID3BQ8IVW6 561 aaPredicted RBP28.38■■■□□ 2.13
CHMP4B-201ENST00000217402 USP13Q92995 863 aaPredicted RBP28.38■■■□□ 2.13
CHMP4B-201ENST00000217402 ZFRQ96KR1 1074 aaKnown RBP28.38■■■□□ 2.13
CHMP4B-201ENST00000217402 KLF16Q9BXK1 252 aaPredicted RBP28.38■■■□□ 2.13
CHMP4B-201ENST00000217402 RDXP35241 583 aaKnown RBP28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 TBX4P57082 545 aa28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 ZXDBP98169 803 aa28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 PIGHQ14442 188 aaPredicted RBP28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 ZNF662Q6ZS27 426 aa28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 CPNE8Q86YQ8 564 aa28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 REXO1L1PQ8IX06 675 aa28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 TPCN2Q8NHX9 752 aa28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 GOLPH3Q9H4A6 298 aa28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 ARHGAP26Q9UNA1 814 aa28.37■■■□□ 2.13
CHMP4B-201ENST00000217402 BUB1BO60566 1050 aaPredicted RBP28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 PROSCO94903 275 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 DEKP35659 375 aaKnown RBP28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 HDAC4P56524 1084 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 TRIP4Q15650 581 aaPredicted RBP28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 STRADAQ7RTN6 431 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 BNIPLQ7Z465 357 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 CCAR2Q8N163 923 aaKnown RBP28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 C17orf53Q8N3J3 647 aaPredicted RBP28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 CENPIQ92674 756 aaPredicted RBP28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 RNF34Q969K3 372 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 PGAP3Q96FM1 320 aaPredicted RBP28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 ASB16Q96NS5 453 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 TDP1Q9NUW8 608 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 TLR6Q9Y2C9 796 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 KCNQ1P51787 676 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 COG7P83436 770 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 SMAD2Q15796 467 aaKnown RBP28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 OTOP3Q7RTS5 596 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 FAM131BQ86XD5 332 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 NIPA2Q8N8Q9 360 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 SMARCD2Q92925 531 aa28.36■■■□□ 2.13
CHMP4B-201ENST00000217402 HBS1LQ9Y450 684 aaKnown RBP28.36■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms