RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 PACSIN1Q9BY11 444 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 LINC00597Q9H2U6 94 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 NHEJ1Q9H9Q4 299 aaPredicted RBP11.07□□□□□ -0.64
LIG1-210ENST00000596332 ANLNQ9NQW6 1124 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 ABCC13Q9NSE7 274 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 TDP1Q9NUW8 608 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 IMPACTQ9P2X3 320 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 FAM50BQ9Y247 325 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 NR2E1Q9Y466 385 aa11.07□□□□□ -0.64
LIG1-210ENST00000596332 TRAV19A0A0A6YYK7 116 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 OTOL1A6NHN0 477 aaPredicted RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 HEPACAM2A8MVW5 462 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 TMCO5BA8MYB1 307 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 LEFTY2O00292 366 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 GFRA2O00451 464 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 NARSO43776 548 aaKnown RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 RTN2O75298 545 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ENDOD1O94919 500 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ABL1P00519 1130 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 GLI1P08151 1106 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 RFC1P35251 1148 aaPredicted RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 ATP5C1P36542 298 aaKnown RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 RPL7AP62424 266 aaKnown RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 OGDHQ02218 1023 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 USP4Q13107 963 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 MAMLD1Q13495 774 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 SLC18A3Q16572 532 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ARHGAP15Q53QZ3 475 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ALKBH5Q6P6C2 394 aaKnown RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 RAD9BQ6WBX8 426 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 Q6ZNB5 142 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ZDHHC17Q8IUH5 632 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 GJD3Q8N144 294 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ARHGAP18Q8N392 663 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ARFGAP1Q8N6T3 406 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 DQX1Q8TE96 717 aaKnown RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 SH3RF2Q8TEC5 729 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ACSF2Q96CM8 615 aaPredicted RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 ARHGEF26Q96DR7 871 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 NPY6RQ99463 290 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 FAM83CQ9BQN1 747 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 DDX23Q9BUQ8 820 aaKnown RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 TRIM7Q9C029 511 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 PDCL3Q9H2J4 239 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 POPDC2Q9HBU9 364 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 TRPC7Q9HCX4 862 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 SPTLC3Q9NUV7 552 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 OBP2AQ9NY56 170 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ADAM22Q9P0K1 906 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 SFMBT1Q9UHJ3 866 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 ZMYM5Q9UJ78 669 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 REXO2Q9Y3B8 237 aaKnown RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 CPQQ9Y646 472 aa11.06□□□□□ -0.64
LIG1-210ENST00000596332 KIF26AQ9ULI4 1882 aaPredicted RBP11.06□□□□□ -0.64
LIG1-210ENST00000596332 C2CD4BA6NLJ0 364 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 SIGLEC16A6NMB1 481 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 MSI1O43347 362 aaKnown RBP11.05□□□□□ -0.64
LIG1-210ENST00000596332 STC2O76061 302 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 COL4A2P08572 1712 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 NSFP46459 744 aaKnown RBP11.05□□□□□ -0.64
LIG1-210ENST00000596332 MRE11P49959 708 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 GALCP54803 685 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 GPC5P78333 572 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 ZNF252P-AS1Q0IIN9 211 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 EFEMP1Q12805 493 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 TRIP4Q15650 581 aaPredicted RBP11.05□□□□□ -0.64
LIG1-210ENST00000596332 GAB4Q2WGN9 574 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 CCDC14Q49A88 953 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 TDRD12Q587J7 1177 aaKnown RBP11.05□□□□□ -0.64
LIG1-210ENST00000596332 EFHC1Q5JVL4 640 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 C10orf120Q5SQS8 335 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 SH3PXD2AQ5TCZ1 1133 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 BTBD8Q5XKL5 378 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 HTR3DQ70Z44 454 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 TAC4Q86UU9 113 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 CELF5Q8N6W0 485 aaKnown RBP11.05□□□□□ -0.64
LIG1-210ENST00000596332 EMC1Q8N766 993 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 C3orf20Q8ND61 904 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 NUP210Q8TEM1 1887 aaPredicted RBP11.05□□□□□ -0.64
LIG1-210ENST00000596332 CENPIQ92674 756 aaPredicted RBP11.05□□□□□ -0.64
LIG1-210ENST00000596332 TTC28Q96AY4 2481 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 NOX5Q96PH1 765 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 ZFP14Q9HCL3 533 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 SMPD4Q9NXE4 827 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 IGSF9Q9P2J2 1179 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 DNMT3LQ9UJW3 386 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 MYO16Q9Y6X6 1858 aa11.05□□□□□ -0.64
LIG1-210ENST00000596332 COL4A3Q01955 1670 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 RCCD1A6NED2 376 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 TMEM191CA6NGB0 347 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 SOWAHDA6NJG2 315 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 GOLGA8SH3BPF8 625 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 SCAMP3O14828 347 aaKnown RBP11.04□□□□□ -0.64
LIG1-210ENST00000596332 ATMINO43313 823 aaPredicted RBP11.04□□□□□ -0.64
LIG1-210ENST00000596332 HSF2BPO75031 334 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 DAB1O75553 588 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 CYP1A2P05177 515 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 CKMP06732 381 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 NCAM1P13591 858 aa11.04□□□□□ -0.64
LIG1-210ENST00000596332 NOS2P35228 1153 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms