RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TNFRSF4P43489 277 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 MXI1P50539 228 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 EOGTQ5NDL2 527 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 PSAPL1Q6NUJ1 521 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 ETFBKMTQ8IXQ9 262 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 KIAA1958Q8N8K9 716 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 SLC35C1Q96A29 364 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 SRRTQ9BXP5 876 aaKnown RBP13.18□□□□□ -0.3
UPF1-203ENST00000594504 IMPG2Q9BZV3 1241 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 NACA2Q9H009 215 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 MMRN2Q9H8L6 949 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 POLMQ9NP87 494 aaPredicted RBP13.18□□□□□ -0.3
UPF1-203ENST00000594504 SPHK2Q9NRA0 654 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 TMEM74BQ9NUR3 256 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 COMMD8Q9NX08 183 aa13.18□□□□□ -0.3
UPF1-203ENST00000594504 BCCIPQ9P287 314 aaKnown RBP eCLIP13.18□□□□□ -0.3
UPF1-203ENST00000594504 HHLA1C9JL84 531 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 KHNYNO15037 678 aaKnown RBP13.17□□□□□ -0.3
UPF1-203ENST00000594504 MDM4O15151 490 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 MAP3K13O43283 966 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 GREM1O60565 184 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 ALDH1A2O94788 518 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 ASS1P00966 412 aaKnown RBP13.17□□□□□ -0.3
UPF1-203ENST00000594504 P2RY2P41231 377 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 PTGER3P43115 390 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 ASPAP45381 313 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 MARSP56192 900 aaKnown RBP13.17□□□□□ -0.3
UPF1-203ENST00000594504 BTBD8Q5XKL5 378 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 SASS6Q6UVJ0 657 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 TPGS1Q6ZTW0 290 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 CYP2U1Q7Z449 544 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 MIB1Q86YT6 1006 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 CCDC150Q8NCX0 1101 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 FBXL13Q8NEE6 735 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 TAS1R2Q8TE23 839 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 OTUB2Q96DC9 234 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 MED15Q96RN5 788 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 ACOX2Q99424 681 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 KLF16Q9BXK1 252 aaPredicted RBP13.17□□□□□ -0.3
UPF1-203ENST00000594504 NMUR1Q9HB89 426 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 APOBEC3GQ9HC16 384 aaKnown RBP13.17□□□□□ -0.3
UPF1-203ENST00000594504 CSNK1G1Q9HCP0 422 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 ANGPTL2Q9UKU9 493 aa13.17□□□□□ -0.3
UPF1-203ENST00000594504 MYO18AQ92614 2054 aaKnown RBP13.17□□□□□ -0.3
UPF1-203ENST00000594504 ATXN2Q99700 1313 aaKnown RBP13.16□□□□□ -0.3
UPF1-203ENST00000594504 CEP192Q8TEP8 1941 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.16□□□□□ -0.3
UPF1-203ENST00000594504 CYP26A1O43174 497 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 TLR5O60602 858 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 TUBP50607 506 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 NOVA1P51513 510 aaKnown RBP13.16□□□□□ -0.3
UPF1-203ENST00000594504 TPD52L1Q16890 204 aaPredicted RBP13.16□□□□□ -0.3
UPF1-203ENST00000594504 MAP7D1Q3KQU3 841 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 UAP1L1Q3KQV9 507 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 C10orf76Q5T2E6 689 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 CLEC20AQ6ZU45 233 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 UNC93AQ86WB7 457 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 TRIM59Q8IWR1 403 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 ZNF513Q8N8E2 541 aaPredicted RBP13.16□□□□□ -0.3
UPF1-203ENST00000594504 WHAMMQ8TF30 809 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 CYFIP2Q96F07 1278 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 FSCN3Q9NQT6 498 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 TLR8Q9NR97 1041 aaKnown RBP13.16□□□□□ -0.3
UPF1-203ENST00000594504 ANO10Q9NW15 660 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 RAB20Q9NX57 234 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 TMEM63CQ9P1W3 806 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 DEC1Q9P2X7 70 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 COQ4Q9Y3A0 265 aa13.16□□□□□ -0.3
UPF1-203ENST00000594504 TNRC6BQ9UPQ9 1833 aaKnown RBP13.16□□□□□ -0.3
UPF1-203ENST00000594504 ADAMTS9Q9P2N4 1935 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 A0A1W2PQH9 124 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 NEDD8-MDP1E9PL57 170 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 PMM2O15305 246 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 HOXC11O43248 304 aaPredicted RBP13.15□□□□□ -0.3
UPF1-203ENST00000594504 TOP3BO95985 862 aaKnown RBP13.15□□□□□ -0.3
UPF1-203ENST00000594504 FAM200BP0CF97 657 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 GABRG2P18507 467 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 CD58P19256 250 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 SPINK2P20155 84 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 ACO1P21399 889 aaKnown RBP13.15□□□□□ -0.3
UPF1-203ENST00000594504 ATP5C1P36542 298 aaKnown RBP13.15□□□□□ -0.3
UPF1-203ENST00000594504 STX1AQ16623 288 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 KLHL40Q2TBA0 621 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 HSF5Q4G112 596 aaPredicted RBP13.15□□□□□ -0.3
UPF1-203ENST00000594504 CBWD6Q4V339 395 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 TRIM61Q5EBN2 209 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 CBWD3Q5JTY5 395 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 CBWD5Q5RIA9 395 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 SH3PXD2AQ5TCZ1 1133 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 DAB2IPQ5VWQ8 1189 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 EGFLAMQ63HQ2 1017 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 CAVIN1Q6NZI2 390 aaKnown RBP13.15□□□□□ -0.3
UPF1-203ENST00000594504 TOGARAM2Q6ZUX3 1019 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 HTR3DQ70Z44 454 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 LPCAT2Q7L5N7 544 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 C11orf74Q86VG3 221 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 P2RY11Q96G91 374 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 FAXDC2Q96IV6 333 aa13.15□□□□□ -0.3
UPF1-203ENST00000594504 HNRNPABQ99729 332 aaKnown RBP13.15□□□□□ -0.3
UPF1-203ENST00000594504 NIF3L1Q9GZT8 377 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms