RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CCDC33Q8N5R6 958 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 ALLCQ8N6M5 410 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 NAT16Q8N8M0 369 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 EHBP1Q8NDI1 1231 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 OLIG1Q8TAK6 271 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 SLC35F5Q8WV83 523 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 KCTD13Q8WZ19 329 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 NDRG1Q92597 394 aaKnown RBP15.62■□□□□ 0.09
CLN3-213ENST00000565047 KREMEN1Q96MU8 473 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 SRRTQ9BXP5 876 aaKnown RBP15.62■□□□□ 0.09
CLN3-213ENST00000565047 ULBP1Q9BZM6 244 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 NACA2Q9H009 215 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 DUSP15Q9H1R2 295 aaPredicted RBP15.62■□□□□ 0.09
CLN3-213ENST00000565047 SEMA4GQ9NTN9 838 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 CHMP5Q9NZZ3 219 aa15.62■□□□□ 0.09
CLN3-213ENST00000565047 DCLK1O15075 740 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 GNA14O95837 355 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 YWHAGP61981 247 aaKnown RBP eCLIP15.61■□□□□ 0.09
CLN3-213ENST00000565047 YWHAEP62258 255 aaKnown RBP15.61■□□□□ 0.09
CLN3-213ENST00000565047 GCNT1Q02742 428 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 KDSRQ06136 332 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 BST2Q10589 180 aaKnown RBP15.61■□□□□ 0.09
CLN3-213ENST00000565047 PUM1Q14671 1186 aaKnown RBP eCLIP15.61■□□□□ 0.09
CLN3-213ENST00000565047 CNGA2Q16280 664 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 RSPO4Q2I0M5 234 aaPredicted RBP15.61■□□□□ 0.09
CLN3-213ENST00000565047 PLK5Q496M5 336 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 CCDC40Q4G0X9 1142 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 PLA2G2CQ5R387 149 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 TMEM270Q6UE05 265 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 MIB1Q86YT6 1006 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 FAM217AQ8IXS0 508 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 SCML4Q8N228 414 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 TERB1Q8NA31 727 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 TXNDC5Q8NBS9 432 aaKnown RBP15.61■□□□□ 0.09
CLN3-213ENST00000565047 UBA3Q8TBC4 463 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 KCNV2Q8TDN2 545 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 CNOT6LQ96LI5 555 aaKnown RBP15.61■□□□□ 0.09
CLN3-213ENST00000565047 NT5C1BQ96P26 610 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 DEC1Q9P2X7 70 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 RWDD2AQ9UIY3 292 aa15.61■□□□□ 0.09
CLN3-213ENST00000565047 PRR5-ARHGAP8B1AHC4 643 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 GFRA2O00451 464 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 EPN2O95208 641 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 PENKP01210 267 aaPredicted RBP15.6■□□□□ 0.09
CLN3-213ENST00000565047 CALCAP01258 141 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 RALAP11233 206 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 TYRP14679 529 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 TIE1P35590 1138 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 RPL34P49207 117 aaKnown RBP15.6■□□□□ 0.09
CLN3-213ENST00000565047 DGKEP52429 567 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 COG7P83436 770 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 ARHGAP8P85298 464 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 FOXK2Q01167 660 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 LMNB2Q03252 620 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 CAMK4Q16566 473 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 ANO4Q32M45 955 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 FYB2Q5VWT5 728 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 PMF1Q6P1K2 205 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 TOGARAM2Q6ZUX3 1019 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 CEP68Q76N32 757 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 RRAGAQ7L523 313 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.6■□□□□ 0.09
CLN3-213ENST00000565047 TADA2BQ86TJ2 420 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 ARHGAP18Q8N392 663 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 MDGA1Q8NFP4 955 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 CDK5RAP1Q96SZ6 601 aaKnown RBP15.6■□□□□ 0.09
CLN3-213ENST00000565047 ZDHHC4Q9NPG8 344 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 WDR35Q9P2L0 1181 aa15.6■□□□□ 0.09
CLN3-213ENST00000565047 AGO1Q9UL18 857 aaKnown RBP15.6■□□□□ 0.09
CLN3-213ENST00000565047 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.6■□□□□ 0.09
CLN3-213ENST00000565047 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.6■□□□□ 0.09
CLN3-213ENST00000565047 TBC1D3BA6NDS4 549 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 YJEFN3A6XGL0 299 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 PRRT4C9JH25 899 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 E7ENQ6 273 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 NEDD8-MDP1E9PL57 170 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 KLF8O95600 359 aaPredicted RBP15.59■□□□□ 0.09
CLN3-213ENST00000565047 SETSIPP0DME0 302 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 CD19P15391 556 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 ATXN1P54253 815 aaKnown RBP15.59■□□□□ 0.09
CLN3-213ENST00000565047 GOLGA8FQ08AF8 430 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 GOLGA8DPQ0D2H9 430 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 EFEMP1Q12805 493 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 TRIP4Q15650 581 aaPredicted RBP15.59■□□□□ 0.09
CLN3-213ENST00000565047 BTBD8Q5XKL5 378 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 PRR23CQ6ZRP0 262 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 CLEC17AQ6ZS10 378 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 TPGS1Q6ZTW0 290 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 PPM1KQ8N3J5 372 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 TSTD1Q8NFU3 115 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 BBS2Q9BXC9 721 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 MARCH2Q9P0N8 246 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 LSM7Q9UK45 103 aaKnown RBP15.59■□□□□ 0.09
CLN3-213ENST00000565047 USP18Q9UMW8 372 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 PCDHB4Q9Y5E5 795 aa15.59■□□□□ 0.09
CLN3-213ENST00000565047 A0A1W2PQF6 199 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 AFPP02771 609 aaKnown RBP15.58■□□□□ 0.08
CLN3-213ENST00000565047 CCDC192P0DO97 292 aa15.58■□□□□ 0.08
CLN3-213ENST00000565047 CORO1AP31146 461 aaKnown RBP15.58■□□□□ 0.08
CLN3-213ENST00000565047 SLC8A3P57103 927 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms