RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RHOT2Q8IXI1 618 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 CMTM8Q8IZV2 173 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 DEFB106AQ8N104 65 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 KIAA1958Q8N8K9 716 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 TDRD5Q8NAT2 981 aaKnown RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 ITFG1Q8TB96 612 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 FEZF2Q8TBJ5 459 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 NDRG1Q92597 394 aaKnown RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 FGF13Q92913 245 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 NXPE3Q969Y0 559 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 FAM122AQ96E09 287 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 TCEAL4Q96EI5 215 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 SERPINB11Q96P15 392 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 SLC2A13Q96QE2 648 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 DCLK3Q9C098 648 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 POMKQ9H5K3 350 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 NMUR1Q9HB89 426 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 METTL5Q9NRN9 209 aaKnown RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 OBP2AQ9NY56 170 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 MARCH2Q9P0N8 246 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 MYO1AQ9UBC5 1043 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 PRKAG3Q9UGI9 489 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 SLC12A6Q9UHW9 1150 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 LSM7Q9UK45 103 aaKnown RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 NENFQ9UMX5 172 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 ZNF510Q9Y2H8 683 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 HBS1LQ9Y450 684 aaKnown RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 ARIH1Q9Y4X5 557 aaPredicted RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 MYOFQ9NZM1 2061 aa9.65□□□□□ -0.87
LDLR-210ENST00000559340 PRUNE2Q8WUY3 3088 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 NCOR1O75376 2440 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 MYO1FO00160 1098 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 CCP110O43303 1012 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 MOSPD3O75425 235 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 RNF8O76064 485 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 OAS1P00973 400 aaKnown RBP9.64□□□□□ -0.87
LDLR-210ENST00000559340 CYP1A2P05177 515 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 LAMP2P13473 410 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 PDGFRAP16234 1089 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 GJA1P17302 382 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 CEBPBP17676 345 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 GPD1P21695 349 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 RRM1P23921 792 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 CCR2P41597 374 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 TFF2Q03403 129 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 EFEMP1Q12805 493 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 KIF5AQ12840 1032 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 NNTQ13423 1086 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 MAMLD1Q13495 774 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 ACAP1Q15027 740 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 SLC5A9Q2M3M2 681 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 SLC25A52Q3SY17 297 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 RAD9BQ6WBX8 426 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 TMEM139Q8IV31 216 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 UNC45BQ8IWX7 931 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 NPAS3Q8IXF0 933 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 CELF5Q8N6W0 485 aaKnown RBP9.64□□□□□ -0.87
LDLR-210ENST00000559340 ARL14EPQ8N8R7 260 aaPredicted RBP9.64□□□□□ -0.87
LDLR-210ENST00000559340 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.64□□□□□ -0.87
LDLR-210ENST00000559340 ZSCAN18Q8TBC5 510 aaPredicted RBP9.64□□□□□ -0.87
LDLR-210ENST00000559340 FNIP1Q8TF40 1166 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 CLEC4CQ8WTT0 213 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 UBE2Q2Q8WVN8 375 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 ING5Q8WYH8 240 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 EDEM1Q92611 657 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 SMARCD2Q92925 531 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 DDX23Q9BUQ8 820 aaKnown RBP9.64□□□□□ -0.87
LDLR-210ENST00000559340 SLC46A2Q9BY10 475 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 TSGA10Q9BZW7 698 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 THAP2Q9H0W7 228 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 ZFP14Q9HCL3 533 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 TDP1Q9NUW8 608 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 THG1LQ9NWX6 298 aaKnown RBP9.64□□□□□ -0.87
LDLR-210ENST00000559340 CTTNBP2NLQ9P2B4 639 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 EPS15L1Q9UBC2 864 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 TJP2Q9UDY2 1190 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 IP6K2Q9UHH9 426 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 RASAL2Q9UJF2 1139 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 TMEM59LQ9UK28 342 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 ARHGAP26Q9UNA1 814 aa9.64□□□□□ -0.87
LDLR-210ENST00000559340 A0A0A6YYK5 440 aaPredicted RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 SLC12A8A0AV02 714 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 C2orf78A6NCI8 922 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 SLC9A3R1O14745 358 aaPredicted RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 ZSCAN12O43309 604 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 COCHO43405 550 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 TADA3O75528 432 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 GRAP2O75791 330 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 OLFM2O95897 454 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 TRUB2O95900 331 aaKnown RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 CCDC175P0C221 793 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 TCF3P15923 654 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 ARHGAP25P42331 645 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 PTPN9P43378 593 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 NOP2P46087 812 aaKnown RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 HARS2P49590 506 aaKnown RBP9.63□□□□□ -0.87
LDLR-210ENST00000559340 SULT1E1P49888 294 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 KCNQ1P51787 676 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 VAV2P52735 878 aa9.63□□□□□ -0.87
LDLR-210ENST00000559340 ZNF143P52747 638 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms