RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 NAA25Q14CX7 972 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 DPYSL2Q16555 572 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 RAB6CQ53S08 254 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 ARHGAP17Q68EM7 881 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 UNC93AQ86WB7 457 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 TMEM130Q8N3G9 435 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 GSDMBQ8TAX9 411 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 SLC35F5Q8WV83 523 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 KIF12Q96FN5 646 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 RAB6CQ9H0N0 254 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 NRDE2Q9H7Z3 1164 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 DCLRE1BQ9H816 532 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 XAB2Q9HCS7 855 aaKnown RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 GTF2IRD1Q9UHL9 959 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 LRRC42Q9Y546 428 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 HEY1Q9Y5J3 304 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 SLC15A5A6NIM6 579 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 FAM159BA6NKW6 160 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 ECM2O94769 699 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 CNTFP26441 200 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 PPIL2Q13356 520 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 Q3C1V9 767 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 PPP1R26Q5T8A7 1209 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 PMF1Q6P1K2 205 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 C4orf50Q6ZRC1 276 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 PAXIP1Q6ZW49 1069 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 ZNF410Q86VK4 478 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 TTC30AQ86WT1 665 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 SULF1Q8IWU6 871 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.99□□□□□ -0.172e-6■■■■■ 41.4
SHMT2-222ENST00000555774 ANKRD13AQ8IZ07 590 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 PPTC7Q8NI37 304 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 KHSRPQ92945 711 aaKnown RBP eCLIP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 EMID1Q96A84 441 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 DCPSQ96C86 337 aaKnown RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 MIPEPQ99797 713 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 CADM1Q9BY67 442 aaKnown RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 DENND2DQ9H6A0 471 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 ALG13Q9NP73 1137 aaKnown RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 PDGFCQ9NRA1 345 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 SIRPGQ9P1W8 387 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 NKX1-2Q9UD57 310 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-222ENST00000555774 GRAP2O75791 330 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 APRTP07741 180 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 CYP2C8P10632 490 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 CYP2F1P24903 491 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 SERPINB3P29508 390 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 RGS7P49802 495 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 HDAC4P56524 1084 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 TAF11Q15544 211 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 MTHFD1LQ6UB35 978 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 TIFABQ6ZNK6 161 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 BZW1Q7L1Q6 419 aaKnown RBP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 FASTKD5Q7L8L6 764 aaKnown RBP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 TEX9Q8N6V9 391 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 LRRC52Q8N7C0 313 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 CENPIQ92674 756 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 OXNAD1Q96HP4 312 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 QKIQ96PU8 341 aaKnown RBP eCLIP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 EBNA1BP2Q99848 306 aaKnown RBP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 C11orf84Q9BUA3 381 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 PLAC1Q9HBJ0 212 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 ARL8BQ9NVJ2 186 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 GPATCH2LQ9NWQ4 482 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 NUMBLQ9Y6R0 609 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 A6NJR5 290 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 PIK3R2O00459 728 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 BIRC5O15392 142 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 PAPSS1O43252 624 aaPredicted RBP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 RFPL1O75677 317 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 GM2AP17900 193 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 GCKP35557 465 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 SARNPP82979 210 aaKnown RBP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 SEMA5AQ13591 1074 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 CA9Q16790 459 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 UNC5AQ6ZN44 842 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 ARMCX2Q7L311 632 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 ARHGAP24Q8N264 748 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 C12orf29Q8N999 325 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 NLRP7Q8WX94 980 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 VTA1Q9NP79 307 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 ADARB2Q9NS39 739 aaKnown RBP13.98□□□□□ -0.17
SHMT2-222ENST00000555774 PCDHA11Q9Y5I1 949 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 PLXNA1Q9UIW2 1896 aa13.98□□□□□ -0.17
SHMT2-222ENST00000555774 RBM47A0AV96 593 aaKnown RBP13.97□□□□□ -0.17
SHMT2-222ENST00000555774 CXorf49A8MYA2 514 aaPredicted RBP13.97□□□□□ -0.17
SHMT2-222ENST00000555774 HACD1B0YJ81 288 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 GYG2O15488 501 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 GSC2O15499 205 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 VTNP04004 478 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 MYL2P10916 166 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 CRHR1P34998 444 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 STXBP5Q5T5C0 1151 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 ZNF534Q76KX8 674 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 SLC26A9Q7LBE3 791 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 CCDC110Q8TBZ0 833 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 E2F7Q96AV8 911 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 NAF1Q96HR8 494 aaKnown RBP13.97□□□□□ -0.17
SHMT2-222ENST00000555774 SIGLEC10Q96LC7 697 aa13.97□□□□□ -0.17
SHMT2-222ENST00000555774 MRPL45Q9BRJ2 306 aaKnown RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms