RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 RAPGEF4Q8WZA2 1011 aa4.19□□□□□ -1.74
USP48-215ENST00000534705 DDB2Q92466 427 aa4.19□□□□□ -1.74
USP48-215ENST00000534705 ZNF668Q96K58 619 aaPredicted RBP4.19□□□□□ -1.74
USP48-215ENST00000534705 FLRT1Q9NZU1 646 aa4.19□□□□□ -1.74
USP48-215ENST00000534705 PADI4Q9UM07 663 aa4.19□□□□□ -1.74
USP48-215ENST00000534705 ST3GAL5Q9UNP4 418 aa4.19□□□□□ -1.74
USP48-215ENST00000534705 SNX14Q9Y5W7 946 aa4.19□□□□□ -1.74
USP48-215ENST00000534705 NPHP4O75161 1426 aaPredicted RBP4.19□□□□□ -1.74
USP48-215ENST00000534705 DIP2AQ14689 1571 aa4.19□□□□□ -1.74
USP48-215ENST00000534705 SETBP1Q9Y6X0 1596 aa4.19□□□□□ -1.74
USP48-215ENST00000534705 NALCNQ8IZF0 1738 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.18□□□□□ -1.74
USP48-215ENST00000534705 CPS1P31327 1500 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 AQP7P3A6NL99 342 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 LINC01548A6NM66 108 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 ZNF213O14771 459 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 CD3EAPO15446 510 aaKnown RBP4.18□□□□□ -1.74
USP48-215ENST00000534705 RRP9O43818 475 aaKnown RBP4.18□□□□□ -1.74
USP48-215ENST00000534705 MAP4K4O95819 1239 aaPredicted RBP4.18□□□□□ -1.74
USP48-215ENST00000534705 HNRNPCP07910 306 aaKnown RBP eCLIP4.18□□□□□ -1.74
USP48-215ENST00000534705 FAM163BP0C2L3 166 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 ADORA2AP29274 412 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 EPHA3P29320 983 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 CCKBRP32239 447 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 CYP2C18P33260 490 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 IDI1Q13907 227 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 ARHGEF7Q14155 803 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 NPY5RQ15761 445 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 TBC1D25Q3MII6 688 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 C3orf38Q5JPI3 329 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 DEPDC1Q5TB30 811 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 ZDHHC24Q6UX98 284 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 ZNF517Q6ZMY9 492 aaPredicted RBP4.18□□□□□ -1.74
USP48-215ENST00000534705 RAB11FIP4Q86YS3 637 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 SDR16C5Q8N3Y7 309 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 LRRC71Q8N4P6 559 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 DPF1Q92782 380 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 PHKBQ93100 1093 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 TIFAQ96CG3 184 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 R3HDM4Q96D70 268 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 REPS1Q96D71 796 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 THAP7Q9BT49 309 aaPredicted RBP4.18□□□□□ -1.74
USP48-215ENST00000534705 ZCWPW1Q9H0M4 648 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 SERGEFQ9UGK8 458 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 CAPN11Q9UMQ6 739 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 ADAMTS5Q9UNA0 930 aa4.18□□□□□ -1.74
USP48-215ENST00000534705 ZNF335Q9H4Z2 1342 aaPredicted RBP4.18□□□□□ -1.74
USP48-215ENST00000534705 NUP155O75694 1391 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 TMEM2Q9UHN6 1383 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 LRRC7Q96NW7 1537 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 MANSC4A6NHS7 340 aaPredicted RBP4.17□□□□□ -1.74
USP48-215ENST00000534705 TARM1B6A8C7 271 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 H7C1Q1 480 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 RASSF9O75901 435 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 PRKAR1BP31321 381 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 CPT1AP50416 773 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 SSBP2P81877 361 aaPredicted RBP4.17□□□□□ -1.74
USP48-215ENST00000534705 SLC10A2Q12908 348 aaPredicted RBP4.17□□□□□ -1.74
USP48-215ENST00000534705 FHL1Q13642 323 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 SLC29A2Q14542 456 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 ZNF750Q32MQ0 723 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 MTX3Q5HYI7 312 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 FCRL6Q6DN72 434 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 MZT2AQ6P582 158 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 AMIGO2Q86SJ2 522 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 CAND1Q86VP6 1230 aaKnown RBP4.17□□□□□ -1.74
USP48-215ENST00000534705 ABHD11Q8NFV4 315 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 DNAJB14Q8TBM8 379 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 PPP2R3CQ969Q6 453 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 C17orf80Q9BSJ5 609 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 SARGQ9BW04 601 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 VN1R3Q9BXE9 311 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 CHST8Q9H2A9 424 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 PNPLA8Q9NP80 782 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 DKK4Q9UBT3 224 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 AOX1Q06278 1338 aa4.17□□□□□ -1.74
USP48-215ENST00000534705 ADAMTS13Q76LX8 1427 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 RIMS2Q9UQ26 1411 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 SRGAP2O75044 1071 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 MT-ND5P03915 603 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 ANXA2P07355 339 aaKnown RBP4.16□□□□□ -1.74
USP48-215ENST00000534705 TRIM27P14373 513 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 PHKG2P15735 406 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 ZKSCAN1P17029 563 aaPredicted RBP4.16□□□□□ -1.74
USP48-215ENST00000534705 IL1R2P27930 398 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 UQCRC1P31930 480 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 PTDSS1P48651 473 aaKnown RBP4.16□□□□□ -1.74
USP48-215ENST00000534705 CARSP49589 748 aaKnown RBP4.16□□□□□ -1.74
USP48-215ENST00000534705 CCT4P50991 539 aaKnown RBP4.16□□□□□ -1.74
USP48-215ENST00000534705 PDE1AP54750 535 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 HTRA4P83105 476 aaPredicted RBP4.16□□□□□ -1.74
USP48-215ENST00000534705 DAG1Q14118 895 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 CYP1B1Q16678 543 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 PTCHD3Q3KNS1 767 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 PCID2Q5JVF3 399 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 TMEM63BQ5T3F8 832 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 SLC9A4Q6AI14 798 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 C11orf96Q7Z7L8 435 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 FANCBQ8NB91 859 aa4.16□□□□□ -1.74
USP48-215ENST00000534705 SEMA6DQ8NFY4 1073 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms