RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TMEM9BQ9NQ34 198 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.51■□□□□ 0.071e-6■■□□□ 14.1
VPS28-215ENST00000531924 RAB20Q9NX57 234 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 NUDT5Q9UKK9 219 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 LNP1A1A4G5 178 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 HHLA1C9JL84 531 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 MDM4O15151 490 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 SMC2O95347 1197 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 DPP6P42658 865 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 DGKGP49619 791 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 KIF11P52732 1056 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 COG7P83436 770 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 LMAN2Q12907 356 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 DCAF17Q5H9S7 520 aaPredicted RBP15.5■□□□□ 0.07
VPS28-215ENST00000531924 PPP1R26Q5T8A7 1209 aaPredicted RBP15.5■□□□□ 0.07
VPS28-215ENST00000531924 N4BP2L1Q5TBK1 243 aaPredicted RBP15.5■□□□□ 0.07
VPS28-215ENST00000531924 CCDC186Q7Z3E2 898 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 SMYD4Q8IYR2 804 aaPredicted RBP15.5■□□□□ 0.07
VPS28-215ENST00000531924 TMEM176AQ96HP8 235 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 FAXDC2Q96IV6 333 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 NUSAP1Q9BXS6 441 aaKnown RBP15.5■□□□□ 0.07
VPS28-215ENST00000531924 CISHQ9NSE2 258 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 OSER1Q9NX31 292 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 CLIC5Q9NZA1 410 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 HOOK1Q9UJC3 728 aaKnown RBP15.5■□□□□ 0.07
VPS28-215ENST00000531924 RASAL2Q9UJF2 1139 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 ANGPTL2Q9UKU9 493 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 STRIP2Q9ULQ0 834 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 ZNF510Q9Y2H8 683 aa15.5■□□□□ 0.07
VPS28-215ENST00000531924 TM4SF5O14894 197 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 TRIM24O15164 1050 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 AP5Z1O43299 807 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 CACNG3O60359 315 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 KCNK5O95279 499 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 NOVA1P51513 510 aaKnown RBP15.49■□□□□ 0.07
VPS28-215ENST00000531924 RPL6Q02878 288 aaKnown RBP15.49■□□□□ 0.07
VPS28-215ENST00000531924 EFEMP1Q12805 493 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 PNOCQ13519 176 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 UAP1L1Q3KQV9 507 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 TRIM61Q5EBN2 209 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 SPDYCQ5MJ68 293 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 LYSMD4Q5XG99 296 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 PSAPL1Q6NUJ1 521 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 SLC36A4Q6YBV0 504 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 SYT12Q8IV01 421 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 SEMA4DQ92854 862 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 DCLK3Q9C098 648 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 MARK1Q9P0L2 795 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 STARD13Q9Y3M8 1113 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 SPAG17Q6Q759 2223 aa15.49■□□□□ 0.07
VPS28-215ENST00000531924 PATE3B3GLJ2 98 aa15.48■□□□□ 0.07
VPS28-215ENST00000531924 CYBBP04839 570 aa15.48■□□□□ 0.07
VPS28-215ENST00000531924 HMBSP08397 361 aa15.48■□□□□ 0.07
VPS28-215ENST00000531924 CHKAP35790 457 aa15.48■□□□□ 0.07
VPS28-215ENST00000531924 ATXN3P54252 364 aaPredicted RBP15.48■□□□□ 0.07
VPS28-215ENST00000531924 YWHAEP62258 255 aaKnown RBP15.48■□□□□ 0.07
VPS28-215ENST00000531924 MAP7D1Q3KQU3 841 aa15.48■□□□□ 0.07
VPS28-215ENST00000531924 ZCWPW2Q504Y3 356 aa15.48■□□□□ 0.07
VPS28-215ENST00000531924 EGFLAMQ63HQ2 1017 aa15.48■□□□□ 0.07
VPS28-215ENST00000531924 SCD5Q86SK9 330 aa15.48■□□□□ 0.07
VPS28-215ENST00000531924 GTPBP4Q9BZE4 634 aaKnown RBP15.48■□□□□ 0.07
VPS28-215ENST00000531924 FAM124BQ9H5Z6 455 aaPredicted RBP15.48■□□□□ 0.07
VPS28-215ENST00000531924 CALCOCO1Q9P1Z2 691 aa15.48■□□□□ 0.07
VPS28-215ENST00000531924 GREM1O60565 184 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 ZNF217O75362 1048 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 STC2O76061 302 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 CFIP05156 583 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 GABRG2P18507 467 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 PRCPP42785 496 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 PTGER3P43115 390 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 MAPK8P45983 427 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 IRX4P78413 519 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 FKBP3Q00688 224 aaKnown RBP15.47■□□□□ 0.07
VPS28-215ENST00000531924 STIM1Q13586 685 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 BECN1Q14457 450 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 STARD3Q14849 445 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 ZNF658Q5TYW1 1059 aaPredicted RBP15.47■□□□□ 0.07
VPS28-215ENST00000531924 ZNF276Q8N554 614 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 FRMD1Q8N878 549 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 SLC4A11Q8NBS3 891 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 IPO4Q8TEX9 1081 aaKnown RBP15.47■□□□□ 0.07
VPS28-215ENST00000531924 SMARCE1Q969G3 411 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 ERLEC1Q96DZ1 483 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 GSDMAQ96QA5 445 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 UBXN6Q9BZV1 441 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 PLK2Q9NYY3 685 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 MARCH2Q9P0N8 246 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 HESX1Q9UBX0 185 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 MBD1Q9UIS9 605 aaPredicted RBP15.47■□□□□ 0.07
VPS28-215ENST00000531924 USP3Q9Y6I4 520 aa15.47■□□□□ 0.07
VPS28-215ENST00000531924 SLC16A3O15427 465 aaKnown RBP15.46■□□□□ 0.07
VPS28-215ENST00000531924 CHRM1P11229 460 aaPredicted RBP15.46■□□□□ 0.07
VPS28-215ENST00000531924 CD19P15391 556 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 CORO1AP31146 461 aaKnown RBP15.46■□□□□ 0.07
VPS28-215ENST00000531924 TKTL1P51854 596 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 RAD23BP54727 409 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 YWHAGP61981 247 aaKnown RBP eCLIP15.46■□□□□ 0.07
VPS28-215ENST00000531924 E2F5Q15329 346 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 ST3GAL2Q16842 350 aa15.46■□□□□ 0.07
VPS28-215ENST00000531924 ARHGAP17Q68EM7 881 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms