RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 LANCL2Q9NS86 450 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT84Q9NSB2 600 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP8A2Q9NTI2 1148 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDRG1Q9NUG6 133 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LMBRD1Q9NUN5 540 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 POT1Q9NUX5 634 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRGBPQ9NV56 204 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 INTS13Q9NVM9 706 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HAUS2Q9NVX0 235 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIH1D1Q9NWS0 290 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM160Q9NX00 188 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBA8Q9NY65 449 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GGA3Q9NZ52 723 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMOD4Q9NZQ9 345 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FLRT1Q9NZU1 646 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SELENONQ9NZV5 590 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 H2AFY2Q9P0M6 372 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CALCOCO1Q9P1Z2 691 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CEP72Q9P209 647 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRFN1Q9P244 771 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR35Q9P2L0 1181 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D14Q9P2M4 693 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYO1AQ9UBC5 1043 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTRRQ9UBK8 725 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DKK3Q9UBP4 350 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRHPRQ9UBQ7 328 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MORF4L1Q9UBU8 362 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 STAP2Q9UGK3 403 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 AFF4Q9UHB7 1163 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SRP68Q9UHB9 627 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRPS1Q9UHF7 1281 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 XPO7Q9UIA9 1087 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HERC5Q9UII4 1024 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SERPINB13Q9UIV8 391 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MSRAQ9UJ68 235 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNE5Q9UJ90 142 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RASAL2Q9UJF2 1139 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 VPS28Q9UK41 221 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ING1Q9UK53 422 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCNL1Q9UK58 526 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GTF3C4Q9UKN8 822 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ITGB1BP2Q9UKP3 347 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMPRSS11EQ9UL52 423 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC39A10Q9ULF5 831 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CBLCQ9ULV8 474 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIMCH1Q9UPQ0 1083 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 AGTPBP1Q9UPW5 1226 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CORO2BQ9UQ03 480 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH3BP1Q9Y3L3 701 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP6V0A2Q9Y487 856 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TELO2Q9Y4R8 837 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDHGB2Q9Y5G2 931 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX8Q9Y5X2 465 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 NR2E3Q9Y5X4 410 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LYVE1Q9Y5Y7 322 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 B3GALT1Q9Y5Z6 326 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP46A1Q9Y6A2 500 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CFAP20Q9Y6A4 193 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAST3O60307 1309 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FLT1P17948 1338 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYPNQ86TC9 1320 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SETD1BQ9UPS6 1966 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 EIF4G1Q04637 1599 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATAD2BQ9ULI0 1458 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYNJ2BP-COX16A0A087WUM0 186 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A0A6YYJ9 748 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 A0A0B4J269 797 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 C17orf113A0A1B0GUU1 675 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 hCG_1807616A0A1W2PRN6 198 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TCRBV5S4A2TA0A5A2 114 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRSS38A1L453 326 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC78A2IDD5 438 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 DENND3A2RUS2 1198 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A10PA6NDY2 464 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 HMX3A6NHT5 357 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC14BA6NHZ5 514 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC69A6NI79 296 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A8PA6NJQ4 464 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SAC3D1A6NKF1 404 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM200CA6NKL6 621 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM90A27PA6NNH2 459 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBKBP1A7MCY6 615 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 EFCAB8A8MWE9 144 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 A8MXE2 369 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 NT5C1B-RDH14C9J2C7 533 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 E7ENX8 843 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTGES3LE9PB15 166 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 F8W8V4 182 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 H0Y3Z8 333 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 H0Y626 953 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 H3BUI4 141 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYO1CO00159 1063 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 GTPBP1O00178 669 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 RTCAO00442 366 aaKnown RBP0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLOD2O00469 737 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 BTN3A1O00481 513 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 PODXLO00592 558 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM38O00635 465 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAN2B1O00754 1011 aa0.63□□□□□ -2.31
RNU4-54P-201ENST00000516428 SOCS2O14508 198 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms