RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SGCEO43556 437 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 DRD4P21917 467 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ANXA13P27216 316 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 KCNQ4P56696 695 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 OSTNP61366 133 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 NME3Q13232 169 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 RBBP7Q16576 425 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 FUT11Q495W5 492 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ATP13A4Q4VNC1 1196 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 CENPLQ8N0S6 344 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 FAM13CQ8NE31 585 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 PPP1R16BQ96T49 567 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 SEPHS2Q99611 448 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 MAGEB5Q9BZ81 275 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ZBTB3Q9H5J0 574 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 TMEM206Q9H813 350 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 PCDHB16Q9NRJ7 776 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 RGS18Q9NS28 235 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 RIC8BQ9NVN3 520 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 KLHL11Q9NVR0 708 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 POLR3HQ9Y535 204 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 KCNA5P22460 613 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 RORAP35398 523 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ETV5P41161 510 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 SLFN12LQ6IEE8 588 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 TIGD7Q6NT04 549 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 AMIGO1Q86WK6 493 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 CIR1Q86X95 450 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 CHERPQ8IWX8 916 aaKnown RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ATAD1Q8NBU5 361 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 SPATA18Q8TC71 538 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ATXN7L3BQ96GX2 97 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 PRRG3Q9BZD7 231 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 FTLP02792 175 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 CENPCQ03188 943 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 NR1I3Q14994 352 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 TTMPQ5BVD1 217 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 SNRNP48Q6IEG0 339 aaKnown RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 SPERTQ8NA61 448 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 TCEAL7Q9BRU2 100 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ARMCX1Q9P291 453 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ENOPH1Q9UHY7 261 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 PNMA3Q9UL41 463 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 SORCS3Q9UPU3 1222 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 STARD13Q9Y3M8 1113 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 LMTK3Q96Q04 1460 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 CHURC1-FNTBB4DL54 471 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 RGL2O15211 777 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 SPARCP09486 303 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 GSTT2P0CG29 244 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 GSTT2BP0CG30 244 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ADRA2BP18089 450 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 MYL12AP19105 171 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ENDOUP21128 410 aaKnown RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 PTPREP23469 700 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 SPRP35270 261 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 CD79BP40259 229 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 USP11P51784 963 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 CYP4F8P98187 520 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 MAPK7Q13164 816 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ZNF829Q3KNS6 432 aaPredicted RBP9.23□□□□□ -0.93
COL6A3-210ENST00000473258 LRRC24Q50LG9 513 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 SPDYAQ5MJ70 313 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ODR4Q5SWX8 454 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 TTC23LQ6PF05 361 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ZNF605Q86T29 641 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 PROSER1Q86XN7 944 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 TBC1D21Q8IYX1 336 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ZNF366Q8N895 744 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 FAM47BQ8NA70 645 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 TCTEX1D2Q8WW35 142 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ANKS1AQ92625 1134 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 BTBD9Q96Q07 612 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 PHF12Q96QT6 1004 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 OR2B2Q9GZK3 357 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 CCNB1IP1Q9NPC3 277 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ATP8A2Q9NTI2 1148 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 GLS2Q9UI32 602 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 RAB26Q9ULW5 256 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 AXIN2Q9Y2T1 843 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 HEY1Q9Y5J3 304 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 ZHX2Q9Y6X8 837 aa9.23□□□□□ -0.93
COL6A3-210ENST00000473258 DDX3XO00571 662 aaKnown RBP eCLIP9.22□□□□□ -0.93
COL6A3-210ENST00000473258 E2F3O00716 465 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 DHX15O43143 795 aaKnown RBP9.22□□□□□ -0.93
COL6A3-210ENST00000473258 MED7O43513 233 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 UGT1A9O60656 530 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 IDO1P14902 403 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 UGT1A6P19224 532 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 UGT1A1P22309 533 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 UGT1A4P22310 534 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 UGT1A3P35503 534 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 UGT1A5P35504 534 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 AFF1P51825 1210 aaKnown RBP9.22□□□□□ -0.93
COL6A3-210ENST00000473258 TNNI3KQ59H18 835 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 SAMD4BQ5PRF9 694 aaKnown RBP9.22□□□□□ -0.93
COL6A3-210ENST00000473258 FBXO42Q6P3S6 717 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 SSX9Q7RTT3 188 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 AMIGO2Q86SJ2 522 aa9.22□□□□□ -0.93
COL6A3-210ENST00000473258 ZNF677Q86XU0 584 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms