RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 CAPN9O14815 690 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 RASSF9O75901 435 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 CBX6O95503 412 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PGFP49763 221 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 SLC26A2P50443 739 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 HDAC4P56524 1084 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 DPYSL3Q14195 570 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 SNX17Q15036 470 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 OASLQ15646 514 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 DUSP28Q4G0W2 176 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PPP1R15BQ5SWA1 713 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 LDLRAD1Q5T700 205 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 C6orf89Q6UWU4 347 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 USP50Q70EL3 339 aaPredicted RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 YTHDF3Q7Z739 585 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 CXorf38Q8TB03 319 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PTPRN2Q92932 1015 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 RNF34Q969K3 372 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 ZNF317Q96PQ6 595 aaPredicted RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 ETNK1Q9HBU6 452 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 ANLNQ9NQW6 1124 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 LRRC37A2A6NM11 1700 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 KIAA0100Q14667 2235 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 NT5C1B-RDH14C9J2C7 533 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 M0QYT0 321 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 CHUKO15111 745 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 MED7O43513 233 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PYGBP11216 843 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 ROR1Q01973 937 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 TAP1Q03518 808 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 MGAT5Q09328 741 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 RNASEH2BQ5TBB1 312 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 HHATQ5VTY9 493 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 SPRYD7Q5W111 196 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 KCNT2Q6UVM3 1135 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 SPATA6LQ8N4H0 392 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PDCD7Q8N8D1 485 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 SCAMP5Q8TAC9 235 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 SLC7A14Q8TBB6 771 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 TCP10LQ8TDR4 215 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 PAFAH2Q99487 392 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 AGO3Q9H9G7 860 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 ARMCX1Q9P291 453 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 FNDC3AQ9Y2H6 1198 aaKnown RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 PRG3Q9Y2Y8 225 aaPredicted RBP8.7□□□□□ -1.02
CD44-208ENST00000428726 IPPQ9Y573 584 aa8.7□□□□□ -1.02
CD44-208ENST00000428726 C2CD4BA6NLJ0 364 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 ATP9BO43861 1147 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 DNAJC6O75061 913 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 B3GAT3O94766 335 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 IL4RP24394 825 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 CYP2F1P24903 491 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 CD52P31358 61 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 THPOP40225 353 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 SULT1E1P49888 294 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 LMNB2Q03252 620 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 ZNF484Q5JVG2 852 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 FBXO47Q5MNV8 452 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 C9orf57Q5W0N0 161 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 CDHR3Q6ZTQ4 885 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 PLD5Q8N7P1 536 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 KATNBL1Q9H079 304 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 ABHD16BQ9H3Z7 469 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 TRMT13Q9NUP7 481 aaKnown RBP8.69□□□□□ -1.02
CD44-208ENST00000428726 ZNF358Q9NW07 568 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 OTOFQ9HC10 1997 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 MSI1O43347 362 aaKnown RBP8.69□□□□□ -1.02
CD44-208ENST00000428726 GPR32O75388 356 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 NEBLO76041 1014 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 HMBSP08397 361 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 LRRC38Q5VT99 294 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 MFSD5Q6N075 450 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 CGB2Q6NT52 195 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 RWDD4Q6NW29 188 aaKnown RBP8.69□□□□□ -1.02
CD44-208ENST00000428726 CENPUQ71F23 418 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 TAOK1Q7L7X3 1001 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 FITM2Q8N6M3 262 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 PQLC3Q8N755 202 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 NAT14Q8WUY8 206 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 CCT6BQ92526 530 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 ATP2A3Q93084 1043 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 SGSM3Q96HU1 749 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 SERAC1Q96JX3 654 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 NOD2Q9HC29 1040 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 ASNSD1Q9NWL6 643 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 HAO1Q9UJM8 370 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 SUFUQ9UMX1 484 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 PCDHGC3Q9UN70 934 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 NUMBLQ9Y6R0 609 aa8.69□□□□□ -1.02
CD44-208ENST00000428726 C5orf60A6NFR6 353 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 A6NJR5 290 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 CCT8L1PA6NM43 557 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 MDM4O15151 490 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 MCF2P10911 925 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 VDRP11473 427 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 NCAM1P13591 858 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 BDNFP23560 247 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 CDH5P33151 784 aaPredicted RBP8.68□□□□□ -1.02
CD44-208ENST00000428726 MSH2P43246 934 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 SESN3P58005 492 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms