RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 MSI1O43347 362 aaKnown RBP10.1□□□□□ -0.79
RIF1-202ENST00000414861 PSTPIP1O43586 416 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 RNF8O76064 485 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 ZDHHC11BP0C7U3 371 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 GTF2F1P35269 517 aaKnown RBP eCLIP10.1□□□□□ -0.79
RIF1-202ENST00000414861 PCK1P35558 622 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 NME3Q13232 169 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 VEPH1Q14D04 833 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 ACAP1Q15027 740 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 PDE12Q6L8Q7 609 aaKnown RBP10.1□□□□□ -0.79
RIF1-202ENST00000414861 ANKS1BQ7Z6G8 1248 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 TMEM150AQ86TG1 271 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 FAM131BQ86XD5 332 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 RHOT1Q8IXI2 618 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 CASP10Q92851 521 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 MYRFLQ96LU7 910 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 SLITRK1Q96PX8 696 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 ABCC13Q9NSE7 274 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 C2orf16Q68DN1 1984 aa10.1□□□□□ -0.79
RIF1-202ENST00000414861 PDE2AO00408 941 aaPredicted RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 CCL16O15467 120 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 TRUB2O95900 331 aaKnown RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 TBX18O95935 607 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 IGLV3-25P01717 112 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 EPHB3P54753 998 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 MLLT1Q03111 559 aaPredicted RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 LLGL1Q15334 1064 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 SCYL2Q6P3W7 929 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 CCDC149Q6ZUS6 474 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 BEND5Q7L4P6 421 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 STRADAQ7RTN6 431 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 CCDC185Q8N715 623 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 UBL4BQ8N7F7 174 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 VN1R2Q8NFZ6 395 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 TRMT2BQ96GJ1 504 aaKnown RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 ZNF512Q96ME7 567 aaPredicted RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 SMOC2Q9H3U7 446 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 CCSER2Q9H7U1 834 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 FAM204AQ9H8W3 233 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 L2HGDHQ9H9P8 463 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 IL21Q9HBE4 155 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 WDR6Q9NNW5 1121 aaKnown RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 ANLNQ9NQW6 1124 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 TLR8Q9NR97 1041 aaKnown RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 TMPRSS4Q9NRS4 437 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.09□□□□□ -0.79
RIF1-202ENST00000414861 GPATCH2LQ9NWQ4 482 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 COMMD8Q9NX08 183 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 DDIT4Q9NX09 232 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 SFMBT1Q9UHJ3 866 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 SPTBN5Q9NRC6 3674 aaKnown RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 PI4K2BG5E9Z4 385 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 I6L893 689 aaPredicted RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 LRG1P02750 347 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 PYGMP11217 842 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 RARGP13631 454 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 PRLRP16471 622 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 TCP1P17987 556 aaKnown RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 NRIP1P48552 1158 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 PPM1LQ5SGD2 360 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 ZNF697Q5TEC3 545 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 LRRC38Q5VT99 294 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 TMC8Q8IU68 726 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 CREG2Q8IUH2 290 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 HS6ST3Q8IZP7 471 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 LRRN4CLQ8ND94 238 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 RAPGEF5Q92565 580 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 SNRNP25Q9BV90 132 aaKnown RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 MAGEB5Q9BZ81 275 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 LMAN2LQ9H0V9 348 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 HCFC1R1Q9NWW0 138 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 CDC23Q9UJX2 597 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 COLQQ9Y215 455 aaPredicted RBP10.09□□□□□ -0.79
RIF1-202ENST00000414861 XIRP2A4UGR9 3374 aa10.09□□□□□ -0.79
RIF1-202ENST00000414861 ZNF840PA6NDX5 716 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 IRAK2O43187 625 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 PRPSAP2O60256 369 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 ENDOD1O94919 500 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 CD48P09326 243 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 RARAP10276 462 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 RDXP35241 583 aaKnown RBP10.08□□□□□ -0.8
RIF1-202ENST00000414861 RWDD2BP57060 319 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 DEUP1Q05D60 604 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 EIF4EBP2Q13542 120 aaPredicted RBP10.08□□□□□ -0.8
RIF1-202ENST00000414861 TAF12Q16514 161 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 CA9Q16790 459 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 DUSP6Q16828 381 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 MSANTD2Q6P1R3 559 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 GAREM2Q75VX8 874 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 RSRC2Q7L4I2 434 aaKnown RBP10.08□□□□□ -0.8
RIF1-202ENST00000414861 POLNQ7Z5Q5 900 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 KATNAL2Q8IYT4 538 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 ARHGAP18Q8N392 663 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 HSPH1Q92598 858 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 MRPL38Q96DV4 380 aaKnown RBP10.08□□□□□ -0.8
RIF1-202ENST00000414861 PGAP3Q96FM1 320 aaPredicted RBP10.08□□□□□ -0.8
RIF1-202ENST00000414861 HERPUD2Q9BSE4 406 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 TRIM62Q9BVG3 475 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 LRRC3Q9BY71 257 aa10.08□□□□□ -0.8
RIF1-202ENST00000414861 CARD9Q9H257 536 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms