RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 LINC00854A0A1B0GVQ3 168 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ATMINO43313 823 aaPredicted RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 SLC26A4O43511 780 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 MSCO60682 206 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 GUCY1B2O75343 617 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ZNF23P17027 643 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 CXCR2P25025 360 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 HTR1BP28222 390 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 OR1E1P30953 314 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 NAMPTP43490 491 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 CLK3P49761 638 aaKnown RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 RHAGQ02094 409 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ITGA9Q13797 1035 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 SERPINA13PQ6UXR4 307 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 EPHX4Q8IUS5 362 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 CENPLQ8N0S6 344 aaPredicted RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 C3orf20Q8ND61 904 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 FAM45AQ8TCE6 357 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 FICDQ9BVA6 458 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 PACSIN1Q9BY11 444 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 DCLK3Q9C098 648 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 CARD9Q9H257 536 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 JMJD4Q9H9V9 463 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 GPAMQ9HCL2 828 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ENTPD4Q9Y227 616 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 CFAP65Q6ZU64 1925 aaKnown RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 CRB1P82279 1406 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 PIPSLA2A3N6 862 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ZNF839A8K0R7 811 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 CNOT3O75175 753 aaKnown RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 RBP1P09455 135 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 MYBL2P10244 700 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 SERPINB1P30740 379 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 KCNJ1P48048 391 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ACTN3Q08043 901 aaPredicted RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 MTA1Q13330 715 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 PPIL2Q13356 520 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ARID5BQ14865 1188 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 CHI3L2Q15782 390 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 DEFB115Q30KQ5 88 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 SLC44A4Q53GD3 710 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 TMEM154Q6P9G4 183 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 AGMOQ6ZNB7 445 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 R3HCC1LQ7Z5L2 792 aaKnown RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 TFAP2DQ7Z6R9 452 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 PALB2Q86YC2 1186 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ARID3BQ8IVW6 561 aaPredicted RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 FMR1NBQ8N0W7 255 aaPredicted RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 ATG16L2Q8NAA4 619 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ACER1Q8TDN7 264 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 DNAJB3Q8WWF6 145 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 C19orf60Q96EN9 201 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 PRRG4Q9BZD6 226 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 ZNF304Q9HCX3 659 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 MRPL17Q9NRX2 175 aaKnown RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 KLHL20Q9Y2M5 609 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 RBM7Q9Y580 266 aaKnown RBP7.4□□□□□ -1.23
UPF2-203ENST00000397053 ALG6Q9Y672 507 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 SHANK2Q9UPX8 1470 aa7.4□□□□□ -1.23
UPF2-203ENST00000397053 SDR42E2A6NKP2 422 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 MEI4A8MW99 385 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 CCNT2O60583 730 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 OR56A5P0C7T3 313 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 TLX1P31314 330 aaPredicted RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 GLRBP48167 497 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 CCNG1P51959 295 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 TGFB2P61812 414 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 BCL2L1Q07817 233 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 TRAF7Q6Q0C0 670 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 SUGP1Q8IWZ8 645 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 DSELQ8IZU8 1212 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 FAM172AQ8WUF8 416 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 TRIM10Q9UDY6 481 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 VTI1BQ9UEU0 232 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 ADAM21Q9UKJ8 722 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.39□□□□□ -1.23
UPF2-203ENST00000397053 RUVBL2Q9Y230 463 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 ACOT9Q9Y305 439 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 SMIM31A0A1B0GVY4 71 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 ABCB1P08183 1280 aaPredicted RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 VAV1P15498 845 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 GYS2P54840 703 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 HERVK_113P62684 666 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 TCEA2Q15560 299 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 PACS1Q6VY07 963 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 BTN2A1Q7KYR7 527 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 MARK2Q7KZI7 788 aaKnown RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 SPPL2AQ8TCT8 520 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 PRMT6Q96LA8 375 aaPredicted RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 ZNF558Q96NG5 402 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 SPATC1LQ9H0A9 340 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 GGT7Q9UJ14 662 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 NCAPD2Q15021 1401 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 KANSL1LA0AUZ9 987 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 CXCL11O14625 94 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 GYS1P13807 737 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 INSRRP14616 1297 aa7.39□□□□□ -1.23
UPF2-203ENST00000397053 TFE3P19532 575 aaPredicted RBP7.39□□□□□ -1.23
UPF2-203ENST00000397053 GPR15P49685 360 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms