RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 STKLD1Q8NE28 680 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 ZNF669Q96BR6 464 aaPredicted RBP9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 TGS1Q96RS0 853 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 TKTL2Q9H0I9 626 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 LHX5Q9H2C1 402 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 PDLIM7Q9NR12 457 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 SLC27A5Q9Y2P5 690 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 STYXL1Q9Y6J8 313 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 ARL5CA6NH57 179 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 HCRTO43612 131 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 TRUB2O95900 331 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 PAMP19021 973 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 HSPA9P38646 679 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 RPL10AP62906 217 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 HTRA3P83110 453 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 ELAVL2Q12926 359 aaKnown RBP9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 MAMDC4Q6UXC1 1216 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 TADA2BQ86TJ2 420 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 RNF135Q8IUD6 432 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 WNT8BQ93098 351 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 STRA6Q9BX79 667 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 HAPLN2Q9GZV7 340 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 RASSF4Q9H2L5 321 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 CDH9Q9ULB4 789 aa9.63□□□□□ -0.87
TMEM39A-201ENST00000319172 ARHGAP42A6NI28 874 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 APOC4-APOC2K7ER74 178 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 FSCN2O14926 492 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 LRCH4O75427 683 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 APOC2P02655 101 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 FGFR1P11362 822 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 RPL9P32969 192 aaKnown RBP9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 NOS2P35228 1153 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 GRIK3Q13003 919 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 PTK7Q13308 1070 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 VPS39Q96JC1 886 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 MUC3BQ9H195 1237 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 PSMC3IPQ9P2W1 217 aaPredicted RBP9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 BAIAP2L1Q9UHR4 511 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 SIX4Q9UIU6 781 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 MYH7BA7E2Y1 1941 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 TCP11X1B4DZS4 312 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 CKMP06732 381 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 KITP10721 976 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 CCR1P32246 355 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 MORF4L2Q15014 288 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 ACAP1Q15027 740 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 DDR2Q16832 855 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 LRRC38Q5VT99 294 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 AFAP1L2Q8N4X5 818 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 TOP6BLQ8N6T0 577 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 DBF4BQ8NFT6 615 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 CHMP6Q96FZ7 201 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 HIPK3Q9H422 1215 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 MYBPHLA2RUH7 354 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 MYADML2A6NDP7 307 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 DNALI1O14645 258 aaPredicted RBP9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 ENDOD1O94919 500 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 TTC4O95801 387 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 IRAK1P51617 712 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 TTC31Q49AM3 519 aaPredicted RBP9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 TAF1BQ53T94 588 aaPredicted RBP9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 MROH9Q5TGP6 573 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 RNF219Q5W0B1 726 aaPredicted RBP9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 SLC24A5Q71RS6 500 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 SDCCAG8Q86SQ7 713 aaPredicted RBP9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 TTC30AQ86WT1 665 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 MYLK4Q86YV6 388 aaPredicted RBP9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 ARHGAP18Q8N392 663 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 ATP6V0D2Q8N8Y2 350 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 STAMBPL1Q96FJ0 436 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 DUSP16Q9BY84 665 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 GGT7Q9UJ14 662 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 KIAA1551Q9HCM1 1747 aa9.62□□□□□ -0.87
TMEM39A-201ENST00000319172 hCG_1818297A0A087WSY0 165 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 PIAS1O75925 651 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 STBD1O95210 358 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 YWHAQP27348 245 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 SSTR1P30872 391 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 LSP1P33241 339 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 RECQLP46063 649 aaPredicted RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 IKBKEQ14164 716 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 SOWAHAQ2M3V2 549 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ZNF618Q5T7W0 954 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 AGBL2Q5U5Z8 902 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 FLRT1Q9NZU1 646 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 LMCD1Q9NZU5 365 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 TSR3Q9UJK0 312 aaKnown RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 NAALADL1Q9UQQ1 740 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 STXBP5LQ9Y2K9 1186 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 RRP15Q9Y3B9 282 aaKnown RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 RPS6KL1Q9Y6S9 549 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 PRRC2BQ5JSZ5 2229 aaKnown RBP9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 LIASO43766 372 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 SLC2A3P11169 496 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ANO4Q32M45 955 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 ZNF449Q6P9G9 518 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 DCLRE1AQ6PJP8 1040 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 C17orf99Q6UX52 265 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 TRIM42Q8IWZ5 723 aa9.61□□□□□ -0.87
TMEM39A-201ENST00000319172 EFHBQ8N7U6 833 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms