RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 KIF2BQ8N4N8 673 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ETNPPLQ8TBG4 499 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 DIS3LQ8TF46 1054 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 TOP1MTQ969P6 601 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 SLC10A4Q96EP9 437 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 POLG2Q9UHN1 485 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 PTBP2Q9UKA9 531 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 KPNA4O00629 521 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 ANGPT2O15123 496 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 GAS2O43903 313 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 TM7SF2O76062 418 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 SRGAP2BP0DMP2 458 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 PSMC5P62195 406 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 GTF2BQ00403 316 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 FASTKD1Q53R41 847 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 EFHC1Q5JVL4 640 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ZNF772Q68DY9 489 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 ZNF57Q68EA5 555 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 PADI6Q6TGC4 694 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 FRA10AC1Q70Z53 315 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 LRRC6Q86X45 466 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ERICH1Q86X53 443 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ZC3H12CQ9C0D7 883 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 MYLK2Q9H1R3 596 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 CASS4Q9NQ75 786 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ATAD3AQ9NVI7 634 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 AP4S1Q9Y587 144 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ARAP2Q8WZ64 1704 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 MARF1Q9Y4F3 1742 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 USP17L5A8MUK1 530 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 IDH3BO43837 385 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ALOX12P18054 663 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 AKAP5P24588 427 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 PRDX5P30044 214 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 SERPINH1P50454 418 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 MMRN1Q13201 1228 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 PPIL2Q13356 520 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 INPP5AQ14642 412 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 RWDD4Q6NW29 188 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 ATG14Q6ZNE5 492 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 RASSF6Q6ZTQ3 369 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 BBS12Q6ZW61 710 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 C16orf62Q7Z3J2 963 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 ART5Q96L15 291 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 RTFDC1Q9BY42 306 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 CELF4Q9BZC1 486 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 CUEDC1Q9NWM3 386 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 RABL2AQ9UBK7 228 aaPredicted RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 SRP68Q9UHB9 627 aaKnown RBP6.61□□□□□ -1.35
VPS35-201ENST00000299138 PNMA3Q9UL41 463 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 RAB26Q9ULW5 256 aa6.61□□□□□ -1.35
VPS35-201ENST00000299138 AFDNP55196 1824 aaKnown RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 WDR64B1ANS9 1081 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 DGAT1O75907 488 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 ZBTB48P10074 688 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 FGFR4P22455 802 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 HOXA10P31260 410 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 MAGEA2P43356 314 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 QARSP47897 775 aaKnown RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 KCNJ2P63252 427 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 IFI35P80217 286 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 LRRC74AQ0VAA2 488 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 MOGSQ13724 837 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 SMAD1Q15797 465 aaKnown RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 ADGRD1Q6QNK2 874 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 LINC00299Q6ZSB3 139 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 C1orf186Q6ZWK4 172 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 C4orf19Q8IY42 314 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 ADGRF4Q8IZF3 695 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 GOLM1Q8NBJ4 401 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 FAM45AQ8TCE6 357 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 CD101Q93033 1021 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 EMSYQ7Z589 1322 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 RGPD8O14715 1765 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 APBA3O96018 575 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 SLC16A1P53985 500 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 TTC39BQ5VTQ0 682 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 USP17L2Q6R6M4 530 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 DENND1AQ8TEH3 1009 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 AFG1LQ8WV93 481 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 ALG3Q92685 438 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 ARHGEF26Q96DR7 871 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 CHID1Q9BWS9 393 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 BCL2L14Q9BZR8 327 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 ZNF556Q9HAH1 456 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 CD209Q9NNX6 404 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 GPCPD1Q9NPB8 672 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 PRDM5Q9NQX1 630 aaPredicted RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 VPS45Q9NRW7 570 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 BTBD7Q9P203 1132 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 ZC3H7BQ9UGR2 993 aaKnown RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 RSL24D1Q9UHA3 163 aaKnown RBP6.6□□□□□ -1.35
VPS35-201ENST00000299138 USP17L3A6NCW0 530 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 USP17L4A6NCW7 530 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 GLRA3O75311 464 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 PROZP22891 400 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 SERPINB5P36952 375 aa6.6□□□□□ -1.35
VPS35-201ENST00000299138 KRT33BQ14525 404 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms