RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 CDK5RAP1Q96SZ6 601 aaKnown RBP12.9□□□□□ -0.34
LINC00339-213ENST00000642137 DDX23Q9BUQ8 820 aaKnown RBP12.9□□□□□ -0.34
LINC00339-213ENST00000642137 NMUR1Q9HB89 426 aa12.9□□□□□ -0.34
LINC00339-213ENST00000642137 METTL5Q9NRN9 209 aaKnown RBP12.9□□□□□ -0.34
LINC00339-213ENST00000642137 TMEM51Q9NW97 253 aa12.9□□□□□ -0.34
LINC00339-213ENST00000642137 OSER1Q9NX31 292 aa12.9□□□□□ -0.34
LINC00339-213ENST00000642137 RRN3Q9NYV6 651 aa12.9□□□□□ -0.34
LINC00339-213ENST00000642137 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.9□□□□□ -0.34
LINC00339-213ENST00000642137 ZMYM5Q9UJ78 669 aa12.9□□□□□ -0.34
LINC00339-213ENST00000642137 PPP2R2CQ9Y2T4 447 aa12.9□□□□□ -0.34
LINC00339-213ENST00000642137 ANAPC1Q9H1A4 1944 aa12.9□□□□□ -0.35
LINC00339-213ENST00000642137 MYO16Q9Y6X6 1858 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 LAMA3Q16787 3333 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 RCCD1A6NED2 376 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 TMEM191CA6NGB0 347 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 CAPN9O14815 690 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 ZSCAN12O43309 604 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 MOSPD3O75425 235 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 TADA3O75528 432 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 DAB1O75553 588 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 MTA2O94776 668 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 NCAM1P13591 858 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 RARGP13631 454 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 DDX6P26196 483 aaKnown RBP eCLIP12.89□□□□□ -0.35
LINC00339-213ENST00000642137 RFC1P35251 1148 aaPredicted RBP12.89□□□□□ -0.35
LINC00339-213ENST00000642137 MATKP42679 507 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 MTHFRP42898 656 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 PGFP49763 221 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 TUBP50607 506 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 HADHBP55084 474 aaKnown RBP12.89□□□□□ -0.35
LINC00339-213ENST00000642137 RNASE9P60153 205 aaKnown RBP12.89□□□□□ -0.35
LINC00339-213ENST00000642137 HECTD3Q5T447 861 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 DCUN1D2Q6PH85 259 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 KLHDC10Q6PID8 442 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 TADA2BQ86TJ2 420 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 DEFB106AQ8N104 65 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 JOSD2Q8TAC2 188 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 RFFLQ8WZ73 363 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 MRPS31Q92665 395 aaKnown RBP12.89□□□□□ -0.35
LINC00339-213ENST00000642137 RIPOR3Q96MK2 946 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 NUP85Q9BW27 656 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 TSGA10Q9BZW7 698 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 LACRTQ9GZZ8 138 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 ATXN3LQ9H3M9 355 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 WDR6Q9NNW5 1121 aaKnown RBP12.89□□□□□ -0.35
LINC00339-213ENST00000642137 OLA1Q9NTK5 396 aaKnown RBP12.89□□□□□ -0.35
LINC00339-213ENST00000642137 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.89□□□□□ -0.35
LINC00339-213ENST00000642137 CTTNBP2NLQ9P2B4 639 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 LCMT1Q9UIC8 334 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 C2orf16Q68DN1 1984 aa12.89□□□□□ -0.35
LINC00339-213ENST00000642137 A0A1W2PRU2 124 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 C2CD4BA6NLJ0 364 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 ATMINO43313 823 aaPredicted RBP12.88□□□□□ -0.35
LINC00339-213ENST00000642137 KRT86O43790 486 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 GRAP2O75791 330 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 ABL1P00519 1130 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 PDGFRAP16234 1089 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 ATP5C1P36542 298 aaKnown RBP12.88□□□□□ -0.35
LINC00339-213ENST00000642137 CCR2P41597 374 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 ARHGAP25P42331 645 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 RPL7AP62424 266 aaKnown RBP12.88□□□□□ -0.35
LINC00339-213ENST00000642137 NTHL1P78549 312 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 ARHGAP15Q53QZ3 475 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 DCAF6Q58WW2 860 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 SYPL2Q5VXT5 272 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 RNF10Q8N5U6 811 aaKnown RBP12.88□□□□□ -0.35
LINC00339-213ENST00000642137 SHKBP1Q8TBC3 707 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 ZNF564Q8TBZ8 553 aaPredicted RBP12.88□□□□□ -0.35
LINC00339-213ENST00000642137 FNIP1Q8TF40 1166 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 RNF139Q8WU17 664 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 RXFP2Q8WXD0 754 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 NT5C3BQ969T7 300 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 TCEAL4Q96EI5 215 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 APOL5Q9BWW9 433 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 TASP1Q9H6P5 420 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 CD207Q9UJ71 328 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 STAP1Q9ULZ2 295 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 PYCARDQ9ULZ3 195 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 TFR2Q9UP52 801 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 NAALADL1Q9UQQ1 740 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 MRPS23Q9Y3D9 190 aaKnown RBP12.88□□□□□ -0.35
LINC00339-213ENST00000642137 OBSL1O75147 1896 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 CLUHO75153 1309 aa12.88□□□□□ -0.35
LINC00339-213ENST00000642137 MYO1FO00160 1098 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 DPYSL4O14531 572 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 CCP110O43303 1012 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 GJB6O95452 261 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 OAS1P00973 400 aaKnown RBP12.87□□□□□ -0.35
LINC00339-213ENST00000642137 GPD1P21695 349 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 FSHRP23945 695 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 GBP1P32455 592 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 FLT3P36888 993 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 PTPN9P43378 593 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 NOP2P46087 812 aaKnown RBP12.87□□□□□ -0.35
LINC00339-213ENST00000642137 ZNF143P52747 638 aaPredicted RBP12.87□□□□□ -0.35
LINC00339-213ENST00000642137 ACAP1Q15027 740 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 SKIV2LQ15477 1246 aaKnown RBP12.87□□□□□ -0.35
LINC00339-213ENST00000642137 SLC5A9Q2M3M2 681 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 SLC25A52Q3SY17 297 aa12.87□□□□□ -0.35
LINC00339-213ENST00000642137 TXNDC8Q6A555 127 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms