RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 HNRNPH3P31942 346 aaKnown RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 HK2P52789 917 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ARPC4P59998 168 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 DDR2Q16832 855 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 FUT11Q495W5 492 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 CCDC149Q6ZUS6 474 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 PALB2Q86YC2 1186 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 THEM5Q8N1Q8 247 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 BHLHE22Q8NFJ8 381 aaPredicted RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 DCPSQ96C86 337 aaKnown RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 THUMPD3Q9BV44 507 aaKnown RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 C6orf62Q9GZU0 229 aaPredicted RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 C8orf4Q9NR00 106 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 RAB26Q9ULW5 256 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ANKRD6Q9Y2G4 727 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 EEF2KO00418 725 aaKnown RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 TGM2P21980 687 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 TKTP29401 623 aaKnown RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 PRKCIP41743 596 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 NCF4Q15080 339 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 TRIQKQ629K1 86 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 FBXW8Q8N3Y1 598 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 PDPRQ8NCN5 879 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 RDM1Q8NG50 284 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ENKURQ8TC29 256 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 TNIP3Q96KP6 325 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 PHACTR1Q9C0D0 580 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 RMND5AQ9H871 391 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 DFFAO00273 331 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 LYNP07948 512 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ADRA1DP25100 572 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 TROAPQ12815 778 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 DPYSQ14117 519 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 STXBP2Q15833 593 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 COBLL1Q53SF7 1204 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 SLC10A5Q5PT55 438 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ARHGAP17Q68EM7 881 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 SWSAP1Q6NVH7 229 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 NSUN4Q96CB9 384 aaKnown RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 A0A0G2JLW4 131 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ZNF12P17014 697 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 SMTNL2Q2TAL5 461 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 N4BP2L1Q5TBK1 243 aaPredicted RBP9.18□□□□□ -0.94
VCL-206ENST00000623461 TMEM139Q8IV31 216 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ULK2Q8IYT8 1036 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ETNPPLQ8TBG4 499 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 NUDT12Q9BQG2 462 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 UGT2B28Q9BY64 529 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 RPS6KL1Q9Y6S9 549 aa9.18□□□□□ -0.94
VCL-206ENST00000623461 ADGRB3O60242 1522 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 CENPXA8MT69 81 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 LSM8O95777 96 aaKnown RBP9.17□□□□□ -0.94
VCL-206ENST00000623461 ADSSP30520 456 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 MGAT5Q09328 741 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 CUL2Q13617 745 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 HLFQ16534 295 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 FAM45BPQ6NSW5 357 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 RINLQ6ZS11 566 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 ABI1Q8IZP0 508 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 TMEM121Q9BTD3 319 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 ZNF408Q9H9D4 720 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 C17orf75Q9HAS0 396 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 NR5A2O00482 541 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 RHOBTB1O94844 696 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 PAEPP09466 180 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 ETS2P15036 469 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 MRPS22P82650 360 aaKnown RBP9.17□□□□□ -0.94
VCL-206ENST00000623461 WASHC5Q12768 1159 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 C1DQ13901 141 aaKnown RBP9.17□□□□□ -0.94
VCL-206ENST00000623461 MFSD5Q6N075 450 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 WDR59Q6PJI9 974 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 ARCQ7LC44 396 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 AKAP14Q86UN6 197 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 KIAA0895Q8NCT3 520 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 VPS37AQ8NEZ2 397 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 OR7A2PQ8NGA2 310 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 ZFAND2BQ8WV99 257 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 PLEKHA8Q96JA3 519 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 NSMCE2Q96MF7 247 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 DDX50Q9BQ39 737 aaKnown RBP9.17□□□□□ -0.94
VCL-206ENST00000623461 NIF3L1Q9GZT8 377 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 DNAJC18Q9H819 358 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 NDFIP2Q9NV92 336 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 MTMR4Q9NYA4 1195 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 E2F8A0AVK6 867 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 DNM1LO00429 736 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 TRIM13O60858 407 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 EDF1O60869 148 aaKnown RBP9.17□□□□□ -0.94
VCL-206ENST00000623461 FDX1P10109 184 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 MAPRE1Q15691 268 aaKnown RBP9.17□□□□□ -0.94
VCL-206ENST00000623461 TIMM50Q3ZCQ8 353 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 C8orf59Q8N0T1 100 aaPredicted RBP9.17□□□□□ -0.94
VCL-206ENST00000623461 ADCY4Q8NFM4 1077 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 NSUN6Q8TEA1 469 aaKnown RBP9.17□□□□□ -0.94
VCL-206ENST00000623461 TADA1Q96BN2 335 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 VCPIP1Q96JH7 1222 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 SPATA17Q96L03 361 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 CD274Q9NZQ7 290 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 SELENONQ9NZV5 590 aa9.17□□□□□ -0.94
VCL-206ENST00000623461 RAD54BQ9Y620 910 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms