RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SYPL2Q5VXT5 272 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 IRF2BP2Q7Z5L9 587 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 SLC30A5Q8TAD4 765 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 BPIFB1Q8TDL5 484 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 KCTD13Q8WZ19 329 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 TRMT61BQ9BVS5 477 aaKnown RBP14.16□□□□□ -0.14
LINC00540-202ENST00000616974 SLC4A5Q9BY07 1137 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 BRD9Q9H8M2 597 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 CYLDQ9NQC7 956 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 CFAP97Q9P2B7 532 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 PCDHGC3Q9UN70 934 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 GON4LQ3T8J9 2241 aa14.16□□□□□ -0.14
LINC00540-202ENST00000616974 DMXL1Q9Y485 3027 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 FGF19O95750 216 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 SKILP12757 684 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 HOXC13P31276 330 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 SIGLEC14Q08ET2 396 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 USP4Q13107 963 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 MTF1Q14872 753 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 C10orf120Q5SQS8 335 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 BSPRYQ5W0U4 402 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 SIX6OS1Q8N1H7 587 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 CELF5Q8N6W0 485 aaKnown RBP14.15□□□□□ -0.14
LINC00540-202ENST00000616974 FAM83CQ9BQN1 747 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 TLR8Q9NR97 1041 aaKnown RBP14.15□□□□□ -0.14
LINC00540-202ENST00000616974 TAS2R14Q9NYV8 317 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 CALCOCO1Q9P1Z2 691 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 ARHGAP26Q9UNA1 814 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 TMEM221A6NGB7 291 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 M0R296 226 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 DPYSL4O14531 572 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 KLKB1P03952 638 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 GYPCP04921 128 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 PLEKP08567 350 aaPredicted RBP14.15□□□□□ -0.14
LINC00540-202ENST00000616974 KRT9P35527 623 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 VCPP55072 806 aaKnown RBP14.15□□□□□ -0.14
LINC00540-202ENST00000616974 SLC7A9P82251 487 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 NAA35Q5VZE5 725 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 FAM183BPQ6ZVS7 135 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 SFTPA1Q8IWL2 248 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 UBXN6Q9BZV1 441 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 NAALADL1Q9UQQ1 740 aa14.15□□□□□ -0.14
LINC00540-202ENST00000616974 A0A1W2PQC6 194 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 CAVIN2O95810 425 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 ALADP13716 330 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 TFE3P19532 575 aaPredicted RBP14.14□□□□□ -0.15
LINC00540-202ENST00000616974 PDE6CP51160 858 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 NOMO3P69849 1222 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 RAB6CQ53S08 254 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 CWF19L1Q69YN2 538 aaKnown RBP14.14□□□□□ -0.15
LINC00540-202ENST00000616974 TRNP1Q6NT89 227 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 CACNA2D4Q7Z3S7 1137 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 BBS7Q8IWZ6 715 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 OVCA2Q8WZ82 227 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 SYT11Q9BT88 431 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 RAB6CQ9H0N0 254 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 FBRSL1Q9HCM7 1045 aaKnown RBP14.14□□□□□ -0.15
LINC00540-202ENST00000616974 SLC2A4RGQ9NR83 387 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 RASAL2Q9UJF2 1139 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 FBXL21Q9UKT6 434 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 EP300Q09472 2414 aaPredicted RBP14.14□□□□□ -0.15
LINC00540-202ENST00000616974 GLULP15104 373 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 RFX1P22670 979 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 DDX6P26196 483 aaKnown RBP eCLIP14.14□□□□□ -0.15
LINC00540-202ENST00000616974 STAT1P42224 750 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 SLC8A3P57103 927 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 FILIP1LQ4L180 1135 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 TMEM110Q86TL2 294 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 PDZD8Q8NEN9 1154 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 FLCNQ8NFG4 579 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 BHMTQ93088 406 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 PPP1R13BQ96KQ4 1090 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 FAM81BQ96LP2 452 aa14.14□□□□□ -0.15
LINC00540-202ENST00000616974 KLF16Q9BXK1 252 aaPredicted RBP14.14□□□□□ -0.15
LINC00540-202ENST00000616974 TRIM24O15164 1050 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 MED7O43513 233 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 STILQ15468 1287 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 EML3Q32P44 896 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 SLC44A4Q53GD3 710 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 OLFML1Q6UWY5 402 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 NXPE3Q969Y0 559 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 FAM149B1Q96BN6 582 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 HSFY1Q96LI6 401 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 LRFN3Q9BTN0 628 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 NACA2Q9H009 215 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 CNGB3Q9NQW8 809 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 ARHGEF3Q9NR81 526 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 KIAA1549LQ6ZVL6 1849 aa14.13□□□□□ -0.15
LINC00540-202ENST00000616974 ZNF263O14978 683 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 WEE1P30291 646 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 CASP14P31944 242 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 ATP5C1P36542 298 aaKnown RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 CDR2Q01850 454 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 GAB4Q2WGN9 574 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 TPRG1Q6ZUI0 275 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 ZNF571Q7Z3V5 609 aaPredicted RBP14.12□□□□□ -0.15
LINC00540-202ENST00000616974 C12orf40Q86WS4 652 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 UBALD2Q8IYN6 164 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 PIAS3Q9Y6X2 628 aa14.12□□□□□ -0.15
LINC00540-202ENST00000616974 SPEGQ15772 3267 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms