RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 TTC30AQ86WT1 665 aa18.65■□□□□ 0.58
SHKBP1-204ENST00000594862 KLF16Q9BXK1 252 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-204ENST00000594862 NMUR1Q9HB89 426 aa18.65■□□□□ 0.58
SHKBP1-204ENST00000594862 RNF40O75150 1001 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 ZBED1O96006 694 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 EGFP01133 1207 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 TKTL1P51854 596 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 COG7P83436 770 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 PDE4CQ08493 712 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 TSSK4Q6SA08 328 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 GBP6Q6ZN66 633 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 NUDT18Q6ZVK8 323 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 LONP2Q86WA8 852 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 SIX6OS1Q8N1H7 587 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 SCML4Q8N228 414 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 RBBP8NLQ8NC74 664 aaPredicted RBP18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 KCTD13Q8WZ19 329 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 SECISBP2LQ93073 1101 aaKnown RBP18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 IPO9Q96P70 1041 aaKnown RBP18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 EPC1Q9H2F5 836 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 OLA1Q9NTK5 396 aaKnown RBP18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 LMBRD1Q9NUN5 540 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 STRIP2Q9ULQ0 834 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 SLC8A2Q9UPR5 921 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 ZNF510Q9Y2H8 683 aa18.64■□□□□ 0.57
SHKBP1-204ENST00000594862 CCDC163A0A0D9SF12 145 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 HOXC11O43248 304 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 IRF1P10914 325 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 OPRD1P41143 372 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 MTIF2P46199 727 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 ZNF132P52740 706 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 MFAP3P55082 362 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 YWHAGP61981 247 aaKnown RBP eCLIP18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 CNGA2Q16280 664 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 MEA1Q16626 185 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 DPCR1Q3MIW9 517 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 PM20D1Q6GTS8 502 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 TRIM65Q6PJ69 517 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 RSRC2Q7L4I2 434 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 CREBRFQ8IUR6 639 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 CAMKK1Q8N5S9 505 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 PNKPQ96T60 521 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 DCLK3Q9C098 648 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 CNGB3Q9NQW8 809 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 OSER1Q9NX31 292 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 RAB23Q9ULC3 237 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 CNTN6Q9UQ52 1028 aa18.63■□□□□ 0.57
SHKBP1-204ENST00000594862 K7ESF4 209 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 MED7O43513 233 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 APODP05090 189 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 PGFP49763 221 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 MAN2A1Q16706 1144 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 HSF5Q4G112 596 aaPredicted RBP18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 RHBDF2Q6PJF5 856 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 RRAGAQ7L523 313 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 SYT13Q7L8C5 426 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 SCD5Q86SK9 330 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 ARHGEF19Q8IW93 802 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 BBS7Q8IWZ6 715 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 RUBCNQ92622 972 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 SPHK2Q9NRA0 654 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 WDR35Q9P2L0 1181 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 KIAA1549LQ6ZVL6 1849 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 FRYLO94915 3013 aa18.62■□□□□ 0.57
SHKBP1-204ENST00000594862 DMXL1Q9Y485 3027 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 M0QYV0 167 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 TBX18O95935 607 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 KRT5P13647 590 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 ADIGQ0VDE8 80 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 EXOC3L4Q17RC7 722 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 GAB4Q2WGN9 574 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 PKDCCQ504Y2 493 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 LY6G5CQ5SRR4 150 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 IRGQQ8WZA9 623 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 GOLGA1Q92805 767 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 HSFY1Q96LI6 401 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 ULBP1Q9BZM6 244 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 FBRSL1Q9HCM7 1045 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 UBE2TQ9NPD8 197 aaPredicted RBP18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 MARCH2Q9P0N8 246 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 APEX2Q9UBZ4 518 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 RASAL2Q9UJF2 1139 aa18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 SMG5Q9UPR3 1016 aaKnown RBP18.61■□□□□ 0.57
SHKBP1-204ENST00000594862 SCAMP3O14828 347 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 SART1O43290 800 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 FBXO21O94952 628 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 MBD3O95983 291 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 GRIA2P42262 883 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 MRPS21P82921 87 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 ANO4Q32M45 955 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 WDR5BQ86VZ2 330 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 MIB1Q86YT6 1006 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 IRF2BP1Q8IU81 584 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 GPR161Q8N6U8 529 aaKnown RBP18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 SUMF1Q8NBK3 374 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 RPLP0P6Q8NHW5 317 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 UBA3Q8TBC4 463 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 KCNV2Q8TDN2 545 aa18.6■□□□□ 0.57
SHKBP1-204ENST00000594862 RNF139Q8WU17 664 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms