RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 BBS7Q8IWZ6 715 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 IL17RCQ8NAC3 791 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 FBXL13Q8NEE6 735 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 SPATA20Q8TB22 786 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 ARID3AQ99856 593 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 ARHGEF4Q9NR80 690 aa21.6■■□□□ 1.05
SHMT1-209ENST00000582653 SDK1Q7Z5N4 2213 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 BCLAF3A2AJT9 711 aaKnown RBP21.59■■□□□ 1.05
SHMT1-209ENST00000582653 TLR5O60602 858 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 CHRM1P11229 460 aaPredicted RBP21.59■■□□□ 1.05
SHMT1-209ENST00000582653 TIE1P35590 1138 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 PREPLQ4J6C6 727 aaPredicted RBP21.59■■□□□ 1.05
SHMT1-209ENST00000582653 CBWD6Q4V339 395 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 COBLL1Q53SF7 1204 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 DCAF17Q5H9S7 520 aaPredicted RBP21.59■■□□□ 1.05
SHMT1-209ENST00000582653 CBWD3Q5JTY5 395 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 CBWD5Q5RIA9 395 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 EMC10Q5UCC4 262 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 TCERG1LQ5VWI1 586 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 BTBD8Q5XKL5 378 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 ANO7Q6IWH7 933 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 PHTF2Q8N3S3 785 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 ALLCQ8N6M5 410 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 TXNDC5Q8NBS9 432 aaKnown RBP21.59■■□□□ 1.05
SHMT1-209ENST00000582653 KCNV2Q8TDN2 545 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 HEXIM2Q96MH2 286 aaKnown RBP21.59■■□□□ 1.05
SHMT1-209ENST00000582653 TSG101Q99816 390 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 TPSD1Q9BZJ3 242 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 NMUR1Q9HB89 426 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 SPHK2Q9NRA0 654 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 CISHQ9NSE2 258 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 NUDT5Q9UKK9 219 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 SCML2Q9UQR0 700 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 INVSQ9Y283 1065 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 MYO16Q9Y6X6 1858 aa21.59■■□□□ 1.05
SHMT1-209ENST00000582653 NCOR2Q9Y618 2525 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 KIAA1549LQ6ZVL6 1849 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 SPAG17Q6Q759 2223 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 HOXC11O43248 304 aaPredicted RBP21.58■■□□□ 1.05
SHMT1-209ENST00000582653 STX10O60499 249 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 ALDH1A2O94788 518 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 CAVIN2O95810 425 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 GBP1P32455 592 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 ATP5C1P36542 298 aaKnown RBP21.58■■□□□ 1.05
SHMT1-209ENST00000582653 FKBP3Q00688 224 aaKnown RBP21.58■■□□□ 1.05
SHMT1-209ENST00000582653 CREB5Q02930 508 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 EOGTQ5NDL2 527 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 STPG1Q5TH74 334 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 TMEM25Q86YD3 366 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 ETFBKMTQ8IXQ9 262 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 NAT16Q8N8M0 369 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 MDGA1Q8NFP4 955 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 OLIG1Q8TAK6 271 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 TIGD1Q96MW7 591 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 KLF16Q9BXK1 252 aaPredicted RBP21.58■■□□□ 1.05
SHMT1-209ENST00000582653 SMOC1Q9H4F8 434 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 POLMQ9NP87 494 aaPredicted RBP21.58■■□□□ 1.05
SHMT1-209ENST00000582653 CYLDQ9NQC7 956 aa21.58■■□□□ 1.05
SHMT1-209ENST00000582653 A0A1W2PQH9 124 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 TBC1D3BA6NDS4 549 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 SGK1O00141 431 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 MDM4O15151 490 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 GREM1O60565 184 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 KLF8O95600 359 aaPredicted RBP21.57■■□□□ 1.04
SHMT1-209ENST00000582653 HNRNPLP14866 589 aaKnown RBP eCLIP21.57■■□□□ 1.04
SHMT1-209ENST00000582653 RAD23BP54727 409 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 KDSRQ06136 332 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 PMS2CLQ68D20 193 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 NUDT18Q6ZVK8 323 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 ZC3H3Q8IXZ2 948 aaKnown RBP21.57■■□□□ 1.04
SHMT1-209ENST00000582653 SLC4A11Q8NBS3 891 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 TMEM176AQ96HP8 235 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 CNTNAP3BQ96NU0 1288 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 DUSP16Q9BY84 665 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 CNTNAP3Q9BZ76 1288 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 PNPLA8Q9NP80 782 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 ZDHHC4Q9NPG8 344 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 DEC1Q9P2X7 70 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 MYH10P35580 1976 aa21.57■■□□□ 1.04
SHMT1-209ENST00000582653 SLC16A3O15427 465 aaKnown RBP21.56■■□□□ 1.04
SHMT1-209ENST00000582653 TULP3O75386 442 aa21.56■■□□□ 1.04
SHMT1-209ENST00000582653 CD44P16070 742 aaKnown RBP21.56■■□□□ 1.04
SHMT1-209ENST00000582653 KIF11P52732 1056 aa21.56■■□□□ 1.04
SHMT1-209ENST00000582653 ANO4Q32M45 955 aa21.56■■□□□ 1.04
SHMT1-209ENST00000582653 ZNF276Q8N554 614 aa21.56■■□□□ 1.04
SHMT1-209ENST00000582653 FAXDC2Q96IV6 333 aa21.56■■□□□ 1.04
SHMT1-209ENST00000582653 DNAI2Q9GZS0 605 aa21.56■■□□□ 1.04
SHMT1-209ENST00000582653 MAN1B1Q9UKM7 699 aa21.56■■□□□ 1.04
SHMT1-209ENST00000582653 STARD13Q9Y3M8 1113 aa21.56■■□□□ 1.04
SHMT1-209ENST00000582653 MYOFQ9NZM1 2061 aa21.56■■□□□ 1.04
SHMT1-209ENST00000582653 ADAM23O75077 832 aa21.55■■□□□ 1.04
SHMT1-209ENST00000582653 RARGP13631 454 aa21.55■■□□□ 1.04
SHMT1-209ENST00000582653 KLHDC10Q6PID8 442 aa21.55■■□□□ 1.04
SHMT1-209ENST00000582653 SCD5Q86SK9 330 aa21.55■■□□□ 1.04
SHMT1-209ENST00000582653 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.55■■□□□ 1.04
SHMT1-209ENST00000582653 HOOK1Q9UJC3 728 aaKnown RBP21.55■■□□□ 1.04
SHMT1-209ENST00000582653 NAGPAQ9UK23 515 aa21.55■■□□□ 1.04
SHMT1-209ENST00000582653 COQ4Q9Y3A0 265 aa21.55■■□□□ 1.04
SHMT1-209ENST00000582653 P2RY2P41231 377 aa21.54■■□□□ 1.04
SHMT1-209ENST00000582653 PLA2G4AP47712 749 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms