RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 POPDC2Q9HBU9 364 aa17.91■□□□□ 0.46
NUP88-210ENST00000574867 OLA1Q9NTK5 396 aaKnown RBP17.91■□□□□ 0.46
NUP88-210ENST00000574867 SPTLC3Q9NUV7 552 aa17.91■□□□□ 0.46
NUP88-210ENST00000574867 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.91■□□□□ 0.46
NUP88-210ENST00000574867 CDH7Q9ULB5 785 aa17.91■□□□□ 0.46
NUP88-210ENST00000574867 NUP210Q8TEM1 1887 aaPredicted RBP17.9■□□□□ 0.46
NUP88-210ENST00000574867 NRG2O14511 850 aaPredicted RBP17.9■□□□□ 0.46
NUP88-210ENST00000574867 TLR5O60602 858 aa17.9■□□□□ 0.46
NUP88-210ENST00000574867 IPO7O95373 1038 aaKnown RBP17.9■□□□□ 0.46
NUP88-210ENST00000574867 RARGP13631 454 aa17.9■□□□□ 0.46
NUP88-210ENST00000574867 C10orf76Q5T2E6 689 aa17.9■□□□□ 0.46
NUP88-210ENST00000574867 KLHDC10Q6PID8 442 aa17.9■□□□□ 0.46
NUP88-210ENST00000574867 LRRC8AQ8IWT6 810 aa17.9■□□□□ 0.46
NUP88-210ENST00000574867 PIWIL1Q96J94 861 aaKnown RBP17.9■□□□□ 0.46
NUP88-210ENST00000574867 PHF7Q9BWX1 381 aaPredicted RBP17.9■□□□□ 0.46
NUP88-210ENST00000574867 TRPC7Q9HCX4 862 aa17.9■□□□□ 0.46
NUP88-210ENST00000574867 LUC7LQ9NQ29 371 aaKnown RBP17.9■□□□□ 0.46
NUP88-210ENST00000574867 OSER1Q9NX31 292 aa17.9■□□□□ 0.46
NUP88-210ENST00000574867 TRAV19A0A0A6YYK7 116 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 EIF3CLB5ME19 914 aaKnown RBP17.89■□□□□ 0.45
NUP88-210ENST00000574867 LCA5LO95447 670 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 OLFM2O95897 454 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 PTMAP06454 111 aaKnown RBP17.89■□□□□ 0.45
NUP88-210ENST00000574867 PGFP49763 221 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 SPA17Q15506 151 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 STXBP5Q5T5C0 1151 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 TXNDC8Q6A555 127 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 DNAJC24Q6P3W2 148 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 HFE2Q6ZVN8 426 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 ARCQ7LC44 396 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 ZNF653Q96CK0 615 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 ACSF2Q96CM8 615 aaPredicted RBP17.89■□□□□ 0.45
NUP88-210ENST00000574867 EIF3CQ99613 913 aaKnown RBP17.89■□□□□ 0.45
NUP88-210ENST00000574867 NR2E1Q9Y466 385 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 ANKRD62A6NC57 917 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 C2orf78A6NCI8 922 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 GOLGA8SH3BPF8 625 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 DAB1O75553 588 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 NDUFA10O95299 355 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 RRM1P23921 792 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 WEE1P30291 646 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 GBP2P32456 591 aaPredicted RBP17.89■□□□□ 0.45
NUP88-210ENST00000574867 RSRC2Q7L4I2 434 aaKnown RBP17.89■□□□□ 0.45
NUP88-210ENST00000574867 MAB21L3Q8N8X9 362 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 RNF139Q8WU17 664 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 ATXN2LQ8WWM7 1075 aaKnown RBP17.89■□□□□ 0.45
NUP88-210ENST00000574867 NACA2Q9H009 215 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 CCSER2Q9H7U1 834 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 EPN1Q9Y6I3 576 aaPredicted RBP17.89■□□□□ 0.45
NUP88-210ENST00000574867 SCINQ9Y6U3 715 aa17.89■□□□□ 0.45
NUP88-210ENST00000574867 DOCK8Q8NF50 2099 aa17.88■□□□□ 0.45
NUP88-210ENST00000574867 HELZP42694 1942 aaKnown RBP17.88■□□□□ 0.45
NUP88-210ENST00000574867 CAPN9O14815 690 aa17.88■□□□□ 0.45
NUP88-210ENST00000574867 AVPR1AP37288 418 aa17.88■□□□□ 0.45
NUP88-210ENST00000574867 CMTM8Q8IZV2 173 aa17.88■□□□□ 0.45
NUP88-210ENST00000574867 TDRD5Q8NAT2 981 aaKnown RBP17.88■□□□□ 0.45
NUP88-210ENST00000574867 SLC2A13Q96QE2 648 aa17.88■□□□□ 0.45
NUP88-210ENST00000574867 SELENOOQ9BVL4 669 aa17.88■□□□□ 0.45
NUP88-210ENST00000574867 SLC46A2Q9BY10 475 aa17.88■□□□□ 0.45
NUP88-210ENST00000574867 PARVAQ9NVD7 372 aa17.88■□□□□ 0.45
NUP88-210ENST00000574867 CNOT8Q9UFF9 292 aaKnown RBP17.88■□□□□ 0.45
NUP88-210ENST00000574867 XIRP2A4UGR9 3374 aa17.88■□□□□ 0.45
NUP88-210ENST00000574867 TCRBV5S1A1TA0A578 114 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 ARHGAP6O43182 974 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 COCHO43405 550 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 CKMP06732 381 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 NCAM1P13591 858 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 ABCB4P21439 1286 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 ATP5C1P36542 298 aaKnown RBP17.87■□□□□ 0.45
NUP88-210ENST00000574867 C10orf120Q5SQS8 335 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 PLEKHA7Q6IQ23 1121 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 RAD9BQ6WBX8 426 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 CTNNBL1Q8WYA6 563 aaPredicted RBP17.87■□□□□ 0.45
NUP88-210ENST00000574867 EDEM1Q92611 657 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 MYADMQ96S97 322 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 METTL5Q9NRN9 209 aaKnown RBP17.87■□□□□ 0.45
NUP88-210ENST00000574867 EPS15L1Q9UBC2 864 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 TMEM59LQ9UK28 342 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 INTUQ9ULD6 942 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 ZNF263O14978 683 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 H2AFZP0C0S5 128 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 KRT3P12035 628 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 HDCP19113 662 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 GALCP54803 685 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 SLC7A9P82251 487 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 TAF5Q15542 800 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 MSANTD2Q6P1R3 559 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 H2AFVQ71UI9 128 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 ZSCAN18Q8TBC5 510 aaPredicted RBP17.87■□□□□ 0.45
NUP88-210ENST00000574867 KHSRPQ92945 711 aaKnown RBP eCLIP17.87■□□□□ 0.45
NUP88-210ENST00000574867 PPP1R9BQ96SB3 815 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 THAP2Q9H0W7 228 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 MRPL47Q9HD33 250 aaKnown RBP17.87■□□□□ 0.45
NUP88-210ENST00000574867 RRN3Q9NYV6 651 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 DNMT3LQ9UJW3 386 aa17.87■□□□□ 0.45
NUP88-210ENST00000574867 SIGLEC16A6NMB1 481 aa17.86■□□□□ 0.45
NUP88-210ENST00000574867 GRAP2O75791 330 aa17.86■□□□□ 0.45
NUP88-210ENST00000574867 FYNP06241 537 aa17.86■□□□□ 0.45
NUP88-210ENST00000574867 TMEM253P0C7T8 217 aa17.86■□□□□ 0.45
NUP88-210ENST00000574867 LAMP2P13473 410 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms