RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TMCO5BA8MYB1 307 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 C2CD4DB7Z1M9 353 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 I6L893 689 aaPredicted RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 MDM4O15151 490 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 RTN2O75298 545 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 FBXO21O94952 628 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 LTFP02788 710 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 FTLP02792 175 aaPredicted RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 LAMP2P13473 410 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 WEE1P30291 646 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 CDC25CP30307 473 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 ACADSBP45954 432 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 TUBP50607 506 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 GALCP54803 685 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 YWHAGP61981 247 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS35-211ENST00000569950 SLC6A3Q01959 620 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 ZNF268Q14587 947 aaPredicted RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 FAM78AQ5JUQ0 283 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 BSPRYQ5W0U4 402 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 CES5AQ6NT32 575 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 MSANTD2Q6P1R3 559 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 ALKBH5Q6P6C2 394 aaKnown RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 BEND5Q7L4P6 421 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 GET4Q7L5D6 327 aaPredicted RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 PHLDB2Q86SQ0 1253 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 LRRC8AQ8IWT6 810 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 ELMOD1Q8N336 334 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 C3orf20Q8ND61 904 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 ST13P5Q8NFI4 369 aaPredicted RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 EDEM1Q92611 657 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 USP13Q92995 863 aaPredicted RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 P2RY11Q96G91 374 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 VCPIP1Q96JH7 1222 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 RIPOR3Q96MK2 946 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 ASB16Q96NS5 453 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 NECTIN4Q96NY8 510 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 SLITRK1Q96PX8 696 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 RPP25Q9BUL9 199 aaKnown RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 SMG9Q9H0W8 520 aaKnown RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 ATXN3LQ9H3M9 355 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 PIDD1Q9HB75 910 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 TRPV4Q9HBA0 871 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 ASNSD1Q9NWL6 643 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 ADAM22Q9P0K1 906 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 THEGQ9P2T0 379 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 EPS15L1Q9UBC2 864 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 UXTQ9UBK9 157 aaPredicted RBP9.74□□□□□ -0.85
VPS35-211ENST00000569950 TFR2Q9UP52 801 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 NAALADL1Q9UQQ1 740 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 TICRRQ7Z2Z1 1910 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 DOCK4Q8N1I0 1966 aa9.74□□□□□ -0.85
VPS35-211ENST00000569950 SOBPA7XYQ1 873 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 EIF3CLB5ME19 914 aaKnown RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 LOC730098B7Z3J9 87 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 ANHXE9PGG2 379 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 TLR5O60602 858 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 DAB1O75553 588 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 GRAP2O75791 330 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 NDUFA10O95299 355 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 ABL1P00519 1130 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 IGLV3-27P01718 113 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 CYP1A2P05177 515 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 RARGP13631 454 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 RFC1P35251 1148 aaPredicted RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 NSFP46459 744 aaKnown RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 SLC8A3P57103 927 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 RPL7AP62424 266 aaKnown RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 SLC7A9P82251 487 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 ZP2Q05996 745 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 MAMLD1Q13495 774 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 HTR4Q13639 388 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 GPR158Q5T848 1215 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 KLHDC10Q6PID8 442 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 ARCQ7LC44 396 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 CPNE8Q86YQ8 564 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 TMTC1Q8IUR5 882 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 CMTM8Q8IZV2 173 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 DEFB106AQ8N104 65 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 SIX6OS1Q8N1H7 587 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 ARFGAP1Q8N6T3 406 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 EMC1Q8N766 993 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 ARL14EPQ8N8R7 260 aaPredicted RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 MAB21L3Q8N8X9 362 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 PDZD8Q8NEN9 1154 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 DQX1Q8TE96 717 aaKnown RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 FGF14Q92915 247 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 NPY6RQ99463 290 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 EIF3CQ99613 913 aaKnown RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 BAG1Q99933 345 aaPredicted RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 PHF7Q9BWX1 381 aaPredicted RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 KLF16Q9BXK1 252 aaPredicted RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 PLA2G2FQ9BZM2 168 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 THAP2Q9H0W7 228 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 TASP1Q9H6P5 420 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 CD320Q9NPF0 282 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 ANLNQ9NQW6 1124 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 METTL5Q9NRN9 209 aaKnown RBP9.73□□□□□ -0.85
VPS35-211ENST00000569950 TRPM5Q9NZQ8 1165 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 SALL4Q9UJQ4 1053 aa9.73□□□□□ -0.85
VPS35-211ENST00000569950 CDH7Q9ULB5 785 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms