RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 PCSK1NQ9UHG2 260 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 PCDHA11Q9Y5I1 949 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 DENND4CQ5VZ89 1909 aa10.76□□□□□ -0.69
USP3-219ENST00000561326 C5orf67F2Z3F1 127 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 M0QYT0 321 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 ADAM12O43184 909 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 LILRB3O75022 631 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 ENDOD1O94919 500 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 TJP3O95049 919 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 KRT1P04264 644 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 CSH1P0DML2 217 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 CSH2P0DML3 217 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 RALAP11233 206 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 GTF2F1P35269 517 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP3-219ENST00000561326 MARCKSL1P49006 195 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 SULT1E1P49888 294 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 RABGGTBP53611 331 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 EPHB3P54753 998 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 AIF1P55008 147 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 DEUP1Q05D60 604 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 PLD1Q13393 1074 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 ZNF211Q13398 564 aaPredicted RBP10.75□□□□□ -0.69
USP3-219ENST00000561326 PDK2Q15119 407 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 TFDP3Q5H9I0 405 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 ERMARDQ5T6L9 678 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 DCAF12L1Q5VU92 463 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 PDE12Q6L8Q7 609 aaKnown RBP10.75□□□□□ -0.69
USP3-219ENST00000561326 TRNP1Q6NT89 227 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 CPNE8Q86YQ8 564 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 PSTKQ8IV42 348 aaKnown RBP10.75□□□□□ -0.69
USP3-219ENST00000561326 TCEAL8Q8IYN2 117 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 TNS4Q8IZW8 715 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 CMASQ8NFW8 434 aaPredicted RBP10.75□□□□□ -0.69
USP3-219ENST00000561326 MICAL1Q8TDZ2 1067 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 FBXO32Q969P5 355 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 RNF25Q96BH1 459 aaPredicted RBP10.75□□□□□ -0.69
USP3-219ENST00000561326 MAK16Q9BXY0 300 aaKnown RBP10.75□□□□□ -0.69
USP3-219ENST00000561326 CYP4F11Q9HBI6 524 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 ENTPD7Q9NQZ7 604 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 OLA1Q9NTK5 396 aaKnown RBP10.75□□□□□ -0.69
USP3-219ENST00000561326 PCDH10Q9P2E7 1040 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 NAALADL1Q9UQQ1 740 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 EFR3BQ9Y2G0 817 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 IRAK3Q9Y616 596 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 ANAPC1Q9H1A4 1944 aa10.75□□□□□ -0.69
USP3-219ENST00000561326 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 FAM92AA1XBS5 289 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 LRRD1A4D1F6 860 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 LCHNA4D1U4 455 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 SLC38A8A6NNN8 435 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 PDE2AO00408 941 aaPredicted RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 FSCN2O14926 492 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 TEX28O15482 410 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 CTIFO43310 598 aaKnown RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 TADA3O75528 432 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 TUBBP07437 444 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 LINC00271P0C7V0 271 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 KDELR1P24390 212 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 KLRC2P26717 231 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 RDXP35241 583 aaKnown RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 PPP3CCP48454 512 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 HDAC4P56524 1084 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 SLC25A11Q02978 314 aaKnown RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 KRT81Q14533 505 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 ARL13BQ3SXY8 428 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 GLE1Q53GS7 698 aaKnown RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 C9orf50Q5SZB4 431 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 TEX35Q5T0J7 233 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 SH3PXD2AQ5TCZ1 1133 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 SDHAF4Q5VUM1 108 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 DAB2IPQ5VWQ8 1189 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 SYPL2Q5VXT5 272 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 CCDC149Q6ZUS6 474 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 HFE2Q6ZVN8 426 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 RTL10Q7L3V2 364 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 RSRC2Q7L4I2 434 aaKnown RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 TADA2BQ86TJ2 420 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 SLC13A5Q86YT5 568 aaPredicted RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 MMGT1Q8N4V1 131 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 TTC9BQ8N6N2 239 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 ARFGAP1Q8N6T3 406 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 MRPL43Q8N983 215 aaKnown RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 PDZD8Q8NEN9 1154 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 CCDC26Q8TAB7 109 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 SLC7A14Q8TBB6 771 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 SPPL3Q8TCT6 385 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 OVCA2Q8WZ82 227 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 HSPH1Q92598 858 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 PGAP3Q96FM1 320 aaPredicted RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 RUNDC3BQ96NL0 473 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 TGS1Q96RS0 853 aaKnown RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 CDK5RAP1Q96SZ6 601 aaKnown RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 TCF25Q9BQ70 676 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 OSBPL8Q9BZF1 889 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 ALG13Q9NP73 1137 aaKnown RBP10.74□□□□□ -0.69
USP3-219ENST00000561326 TLR9Q9NR96 1032 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 CLIC5Q9NZA1 410 aa10.74□□□□□ -0.69
USP3-219ENST00000561326 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.74□□□□□ -0.69
USP3-219ENST00000561326 FEZ2Q9UHY8 353 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms