RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ENGASEQ8NFI3 743 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 NETO1Q8TDF5 533 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 SMARCE1Q969G3 411 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 OTUB2Q96DC9 234 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 LOXL4Q96JB6 756 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 ZC3H10Q96K80 434 aaKnown RBP10.78□□□□□ -0.68
LDLR-214ENST00000560628 GSDMAQ96QA5 445 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 TSG101Q99816 390 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 DUSP16Q9BY84 665 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 SPHK2Q9NRA0 654 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 RXFP3Q9NSD7 469 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 CISHQ9NSE2 258 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 NAGPAQ9UK23 515 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 CIZ1Q9ULV3 898 aaPredicted RBP10.78□□□□□ -0.68
LDLR-214ENST00000560628 MMP17Q9ULZ9 603 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 FRYLO94915 3013 aa10.78□□□□□ -0.68
LDLR-214ENST00000560628 A0A0A0MRY4 1105 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 TRIM49BA6NDI0 452 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.77□□□□□ -0.69
LDLR-214ENST00000560628 SLC30A4O14863 429 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 HOXC11O43248 304 aaPredicted RBP10.77□□□□□ -0.69
LDLR-214ENST00000560628 STX10O60499 249 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 GREM1O60565 184 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 RHOBTB1O94844 696 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 ZNF806P0C7X5 589 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 EIF2DP41214 584 aaKnown RBP10.77□□□□□ -0.69
LDLR-214ENST00000560628 WASP42768 502 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 TNFRSF4P43489 277 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 KIR2DL1P43626 348 aaPredicted RBP10.77□□□□□ -0.69
LDLR-214ENST00000560628 PLA2G4AP47712 749 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 KIF11P52732 1056 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 RAD23BP54727 409 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 MCCD1P59942 119 aaPredicted RBP10.77□□□□□ -0.69
LDLR-214ENST00000560628 FKBP3Q00688 224 aaKnown RBP10.77□□□□□ -0.69
LDLR-214ENST00000560628 CREB5Q02930 508 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 LRMPQ12912 555 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 ELF2Q15723 593 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 CBWD6Q4V339 395 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 USP39Q53GS9 565 aaKnown RBP10.77□□□□□ -0.69
LDLR-214ENST00000560628 CBWD3Q5JTY5 395 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 CBWD5Q5RIA9 395 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 ETFBKMTQ8IXQ9 262 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 PHTF2Q8N3S3 785 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 SLC4A11Q8NBS3 891 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 RLN3Q8WXF3 142 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 TMEM176AQ96HP8 235 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 DNAI2Q9GZS0 605 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 CYLDQ9NQC7 956 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.77□□□□□ -0.69
LDLR-214ENST00000560628 DEC1Q9P2X7 70 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 DNMT3LQ9UJW3 386 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 DMXL1Q9Y485 3027 aa10.77□□□□□ -0.69
LDLR-214ENST00000560628 HELZP42694 1942 aaKnown RBP10.76□□□□□ -0.69
LDLR-214ENST00000560628 RALGAPA1Q6GYQ0 2036 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 NEDD8-MDP1E9PL57 170 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 ADAM23O75077 832 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 ALDH1A2O94788 518 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 HMBSP08397 361 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 CHRM1P11229 460 aaPredicted RBP10.76□□□□□ -0.69
LDLR-214ENST00000560628 BCKDHBP21953 392 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 KCNA4P22459 653 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 MPLP40238 635 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 EOGTQ5NDL2 527 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 PLA2G2CQ5R387 149 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 C10orf76Q5T2E6 689 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 TCEAL6Q6IPX3 200 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 RASSF3Q86WH2 238 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 MIB1Q86YT6 1006 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 PGBD3Q8N328 593 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 FRMD1Q8N878 549 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 MDGA1Q8NFP4 955 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 SPATA20Q8TB22 786 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 NDRG1Q92597 394 aaKnown RBP10.76□□□□□ -0.69
LDLR-214ENST00000560628 BHMTQ93088 406 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 TCEAL3Q969E4 200 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 ERLEC1Q96DZ1 483 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 CNOT6LQ96LI5 555 aaKnown RBP10.76□□□□□ -0.69
LDLR-214ENST00000560628 BBS2Q9BXC9 721 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 PNPLA8Q9NP80 782 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 DNAJC17Q9NVM6 304 aaKnown RBP10.76□□□□□ -0.69
LDLR-214ENST00000560628 LSM7Q9UK45 103 aaKnown RBP10.76□□□□□ -0.69
LDLR-214ENST00000560628 USP3Q9Y6I4 520 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 MYH10P35580 1976 aa10.76□□□□□ -0.69
LDLR-214ENST00000560628 TULP2O00295 520 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 SLC16A3O15427 465 aaKnown RBP10.75□□□□□ -0.69
LDLR-214ENST00000560628 FOXD2O60548 495 aaPredicted RBP10.75□□□□□ -0.69
LDLR-214ENST00000560628 STC2O76061 302 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 CAVIN2O95810 425 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 KLKB1P03952 638 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 RALAP11233 206 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 TYRP14679 529 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 CD44P16070 742 aaKnown RBP10.75□□□□□ -0.69
LDLR-214ENST00000560628 GOLGA8FQ08AF8 430 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 GOLGA8DPQ0D2H9 430 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 EFEMP1Q12805 493 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 COBLL1Q53SF7 1204 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 IL31Q6EBC2 164 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 GRAMD4Q6IC98 578 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 KLHL10Q6JEL2 608 aa10.75□□□□□ -0.69
LDLR-214ENST00000560628 KLHDC10Q6PID8 442 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms