RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 USP29Q9HBJ7 922 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 SOX13Q9UN79 622 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 SORCS3Q9UPU3 1222 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 BIRC5O15392 142 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 KCNN4O15554 427 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 ENDOD1O94919 500 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 APOEP02649 317 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 BPGMP07738 259 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 HIRAP54198 1017 aaPredicted RBP18.21■□□□□ 0.51
SYNE3-202ENST00000553340 SP2Q02086 613 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 WASHC5Q12768 1159 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 STX3Q13277 289 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 C1orf228Q6PIY5 440 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 NDUFAF2Q8N183 169 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 PPP2R3CQ969Q6 453 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 KLC2Q9H0B6 622 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 PCMTD2Q9NV79 361 aa18.21■□□□□ 0.51
SYNE3-202ENST00000553340 SCAF8Q9UPN6 1271 aaKnown RBP18.21■□□□□ 0.51
SYNE3-202ENST00000553340 TNNC2P02585 160 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 CRHR1P34998 444 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 EFNA5P52803 228 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 CDC16Q13042 620 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 PEBP4Q96S96 227 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 PPM1HQ9ULR3 514 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 MSCO60682 206 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 RAP1GAPP47736 663 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 HIC1Q14526 733 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 AAGABQ6PD74 315 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 ARCQ7LC44 396 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 CAND1Q86VP6 1230 aaKnown RBP18.2■□□□□ 0.5
SYNE3-202ENST00000553340 LRRC39Q96DD0 335 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 MCRS1Q96EZ8 462 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 TUBGCP5Q96RT8 1024 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 ADPGKQ9BRR6 497 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 C20orf27Q9GZN8 174 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 SMYD2Q9NRG4 433 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 THAP1Q9NVV9 213 aa18.2■□□□□ 0.5
SYNE3-202ENST00000553340 CPSF3Q9UKF6 684 aaKnown RBP18.2■□□□□ 0.5
SYNE3-202ENST00000553340 UGT1A9O60656 530 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 APRTP07741 180 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 AOC1P19801 751 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 UBAP2LQ14157 1087 aaKnown RBP18.19■□□□□ 0.5
SYNE3-202ENST00000553340 FAXCQ5TGI0 409 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 RASIP1Q5U651 963 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 ADGRG6Q86SQ4 1221 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 SLC25A41Q8N5S1 370 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 SIKE1Q9BRV8 207 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 SDCBP2Q9H190 292 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 UGT1A7Q9HAW7 530 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 UGT1A10Q9HAW8 530 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 UGT1A8Q9HAW9 530 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 SDR42E2A6NKP2 422 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 WNT10BO00744 389 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 USP1O94782 785 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 HOXC6P09630 235 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 CSH1P0DML2 217 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 CSH2P0DML3 217 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 ZNF143P52747 638 aaPredicted RBP18.19■□□□□ 0.5
SYNE3-202ENST00000553340 FAM102AQ5T9C2 384 aaPredicted RBP18.19■□□□□ 0.5
SYNE3-202ENST00000553340 KRT27Q7Z3Y8 459 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 WDR75Q8IWA0 830 aaKnown RBP18.19■□□□□ 0.5
SYNE3-202ENST00000553340 STKLD1Q8NE28 680 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 PPP1R14CQ8TAE6 165 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 RTP4Q96DX8 246 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 ANKRD36BP1Q96IX9 119 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 RNF157Q96PX1 679 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 EBF4Q9BQW3 602 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 PLAC1Q9HBJ0 212 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 SLC15A5A6NIM6 579 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 ZBED1O96006 694 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 GSTT1P30711 240 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 DYNC1I2Q13409 638 aaKnown RBP18.19■□□□□ 0.5
SYNE3-202ENST00000553340 FAM182AQ5T1J6 154 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 MROH9Q5TGP6 573 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 UNC5AQ6ZN44 842 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 MAP7D3Q8IWC1 876 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 PRPF31Q8WWY3 499 aaKnown RBP18.19■□□□□ 0.5
SYNE3-202ENST00000553340 ACO2Q99798 780 aaKnown RBP18.19■□□□□ 0.5
SYNE3-202ENST00000553340 XAB2Q9HCS7 855 aaKnown RBP18.19■□□□□ 0.5
SYNE3-202ENST00000553340 NRBP2Q9NSY0 501 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 ETNK2Q9NVF9 386 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 IL1RAPL1Q9NZN1 696 aa18.19■□□□□ 0.5
SYNE3-202ENST00000553340 A0A088AWK7 358 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 ARHGAP42A6NI28 874 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 CPOXP36551 454 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 SERPINB9P50453 376 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 OAZ1P54368 228 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 KRT81Q14533 505 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 ZNF667Q5HYK9 610 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 EFHC1Q5JVL4 640 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 REPS2Q8NFH8 660 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 CNPY3Q9BT09 278 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 S100A14Q9HCY8 104 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 BUD23O43709 281 aaKnown RBP18.18■□□□□ 0.5
SYNE3-202ENST00000553340 PRPSAP2O60256 369 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 KRT19P08727 400 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 C6orf222P0C671 652 aaPredicted RBP18.18■□□□□ 0.5
SYNE3-202ENST00000553340 GPD1P21695 349 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 RBL1P28749 1068 aa18.18■□□□□ 0.5
SYNE3-202ENST00000553340 GABRB2P47870 512 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms