RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MAGEA4P43358 317 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 SEC24CP53992 1094 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 SLC8A3P57103 927 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 BASP1P80723 227 aaKnown RBP15.13■□□□□ 0.01
CLIP1-216ENST00000541410 CAV1Q03135 178 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 ERMARDQ5T6L9 678 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 AGBL2Q5U5Z8 902 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 FAM35AQ86V20 835 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 ANKMY2Q8IV38 441 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 SIX6OS1Q8N1H7 587 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 BBOF1Q8ND07 529 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 ZMIZ2Q8NF64 920 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 MRRFQ96E11 262 aaKnown RBP15.13■□□□□ 0.01
CLIP1-216ENST00000541410 C11orf84Q9BUA3 381 aaPredicted RBP15.13■□□□□ 0.01
CLIP1-216ENST00000541410 AP4E1Q9UPM8 1137 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 NAALADL1Q9UQQ1 740 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 EIF3HO15372 352 aaKnown RBP eCLIP15.13■□□□□ 0.01
CLIP1-216ENST00000541410 USP17L7P0C7H9 530 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 CYP2F1P24903 491 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 ACADSBP45954 432 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 RPL34P49207 117 aaKnown RBP15.13■□□□□ 0.01
CLIP1-216ENST00000541410 PPP2R2AP63151 447 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 MRPS5P82675 430 aaKnown RBP15.13■□□□□ 0.01
CLIP1-216ENST00000541410 AUHQ13825 339 aaKnown RBP15.13■□□□□ 0.01
CLIP1-216ENST00000541410 MAP7D3Q8IWC1 876 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 ZCCHC9Q8N567 271 aaKnown RBP15.13■□□□□ 0.01
CLIP1-216ENST00000541410 SELENOSQ9BQE4 189 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 RTP3Q9BQQ7 232 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 ULBP1Q9BZM6 244 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 FAM129AQ9BZQ8 928 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 FAM107BQ9H098 131 aa15.13■□□□□ 0.01
CLIP1-216ENST00000541410 YJEFN3A6XGL0 299 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 E7ENQ6 273 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 ZNF623O75123 536 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 HOXD10P28358 340 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 L1CAMP32004 1257 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 MDH1P40925 334 aaKnown RBP15.12■□□□□ 0.01
CLIP1-216ENST00000541410 MATKP42679 507 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 PTPN9P43378 593 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 BCAR1P56945 870 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 ROR1Q01973 937 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 IFRD2Q12894 506 aaPredicted RBP15.12■□□□□ 0.01
CLIP1-216ENST00000541410 NOMO1Q15155 1222 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 FAXCQ5TGI0 409 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 CD300LGQ6UXG3 332 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 ECHDC2Q86YB7 292 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 ZNF280BQ86YH2 543 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 CCDC13Q8IYE1 715 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 ZBED8Q8IZ13 594 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 TET1Q8NFU7 2136 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 CPT1BQ92523 772 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 PRCCQ92733 491 aaPredicted RBP15.12■□□□□ 0.01
CLIP1-216ENST00000541410 TLCD1Q96CP7 247 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 KCTD15Q96SI1 283 aaPredicted RBP15.12■□□□□ 0.01
CLIP1-216ENST00000541410 PPANQ9NQ55 473 aaKnown RBP15.12■□□□□ 0.01
CLIP1-216ENST00000541410 TMLHEQ9NVH6 421 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 A0A1W2PQ45 241 aaPredicted RBP15.12■□□□□ 0.01
CLIP1-216ENST00000541410 A0A1W2PQY0 241 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 M0QYT0 321 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 APOL1O14791 398 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 CREB1P16220 341 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 GOT1P17174 413 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 DESP17661 470 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 BDNFP23560 247 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 LSP1P33241 339 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 LHX1P48742 406 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 YWHAZP63104 245 aaKnown RBP15.12■□□□□ 0.01
CLIP1-216ENST00000541410 GBE1Q04446 702 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 PDIA2Q13087 525 aaKnown RBP15.12■□□□□ 0.01
CLIP1-216ENST00000541410 PDK2Q15119 407 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 MSS51Q4VC12 460 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 EFHC1Q5JVL4 640 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 OTUD1Q5VV17 481 aaPredicted RBP15.12■□□□□ 0.01
CLIP1-216ENST00000541410 LHX8Q68G74 356 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 CCHCR1Q8TD31 782 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 BCAS4Q8TDM0 211 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 STARD7Q9NQZ5 370 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 ETNK2Q9NVF9 386 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 MTMR10Q9NXD2 777 aa15.12■□□□□ 0.01
CLIP1-216ENST00000541410 F5H423 210 aaPredicted RBP15.11■□□□□ 0.01
CLIP1-216ENST00000541410 KCNN4O15554 427 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 AMPD1P23109 780 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 RBL1P28749 1068 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 SLC10A2Q12908 348 aaPredicted RBP15.11■□□□□ 0.01
CLIP1-216ENST00000541410 TFDP2Q14188 446 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 FNBP1LQ5T0N5 605 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 SH3TC2Q8TF17 1288 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 EDEM1Q92611 657 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 CENPIQ92674 756 aaPredicted RBP15.11■□□□□ 0.01
CLIP1-216ENST00000541410 MYLPFQ96A32 169 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 DNAI2Q9GZS0 605 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 NRDE2Q9H7Z3 1164 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 SLC12A6Q9UHW9 1150 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 MDM4O15151 490 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 TMEM63AO94886 807 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 AMHP03971 560 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 OR4Q2P0C623 313 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 RAB27AP51159 221 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 MORF4L2Q15014 288 aa15.11■□□□□ 0.01
CLIP1-216ENST00000541410 C6orf118Q5T5N4 469 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms